Rust crate to deal with phylogenetic trees
☆14Dec 3, 2025Updated 8 months ago
Alternatives and similar repositories for phylotree-rs
Users that are interested in phylotree-rs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and accurate Phylogeny estimation with self-attention Networks☆42Apr 19, 2025Updated last year
- ☆16Jan 28, 2026Updated 6 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated last month
- ☆14Feb 9, 2026Updated 6 months ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆22Nov 24, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- A vec-backed tree structure with tree-specific generational indexes.☆41Mar 29, 2024Updated 2 years ago
- Minimum plain text representation of kmer sets☆18Jan 30, 2025Updated last year
- An ultrafast and memory efficient tool for phylogenomics☆26Apr 17, 2026Updated 4 months ago
- RASPTANK est un robot contrôlé par un Raspberry Pi et développé en Python. Il intègre des fonctionnalités avancées comme le suivi de lign…☆19May 2, 2025Updated last year
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Jul 29, 2026Updated 2 weeks ago
- Python language bindings for bwa☆12Jul 19, 2026Updated 3 weeks ago
- my maths toolkit☆11May 8, 2025Updated last year
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆29Jul 21, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Make phylogenetic trees and lineages from the NCBI Taxonomy database☆14Mar 19, 2023Updated 3 years ago
- Build and deploy cross platform bioinformatic utilities with Rust.☆19Apr 1, 2025Updated last year
- Eukaryotic genome annotation software.☆30Aug 3, 2026Updated 2 weeks ago
- nf-test utility functions☆13Updated this week
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated last month
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆33Aug 26, 2024Updated last year
- Defunct. Use https://github.com/Linuxbrew/docker☆14Jun 24, 2016Updated 10 years ago
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Aug 3, 2026Updated 2 weeks ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- CLI tool for querying the Genome Taxonomy Database (GTDB). Batch search, genome cards, taxon lineages, and cross-release taxonomic compar…☆31Updated this week
- A vec-backed tree structure with tree-specific generational indexes.☆20Aug 3, 2025Updated last year
- Unleash the full power of your k-mers!☆25Jul 17, 2026Updated last month
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆54Jun 22, 2026Updated last month
- Faster FASTA and FASTQ file processing command line tool - parsing, sorting, deduplication, transliteration, filter, and stats☆22Aug 2, 2026Updated 2 weeks ago
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 9 months ago
- ☆15Nov 30, 2023Updated 2 years ago
- Fast sequence distance estimates☆30Aug 3, 2026Updated 2 weeks ago
- An ultra-fast and accurate tool for KEGG Orthology (KO) assignment, powered by deep learning.☆21Jul 30, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast tool to build the core genome of prokaryotic genomes. Can handle large datasets. Dependencis: Usearch & Numpy☆10Nov 26, 2025Updated 8 months ago
- Just another minhash implementation.☆13May 28, 2026Updated 2 months ago
- HTTP client / server with limited dependencies☆24Nov 20, 2024Updated last year
- De novo metagenome assembler☆14Mar 29, 2023Updated 3 years ago
- Bitpacked sequence trait and implementation☆19Jul 7, 2026Updated last month
- Needleman-Wunsch Alignment in Go☆12Nov 9, 2020Updated 5 years ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆37Apr 20, 2026Updated 3 months ago