Rust crate to deal with phylogenetic trees
☆14Dec 3, 2025Updated 7 months ago
Alternatives and similar repositories for phylotree-rs
Users that are interested in phylotree-rs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 5 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆18May 18, 2026Updated last month
- Development repo for pyani-plus (the next iteration of pyani)☆35Jul 2, 2026Updated last week
- ☆14Feb 9, 2026Updated 4 months ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆29Jul 21, 2025Updated 11 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Eukaryotic genome annotation software.☆28Jun 22, 2026Updated 2 weeks ago
- Fast and accurate Phylogeny estimation with self-attention Networks☆42Apr 19, 2025Updated last year
- Minimum plain text representation of kmer sets☆18Jan 30, 2025Updated last year
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Nov 24, 2024Updated last year
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- An ultrafast and memory efficient tool for phylogenomics☆26Apr 17, 2026Updated 2 months ago
- A vec-backed tree structure with tree-specific generational indexes.☆41Mar 29, 2024Updated 2 years ago
- An extensible and performant aligner and read mapper☆94Jun 29, 2026Updated last week
- Python language bindings for bwa☆12Jun 16, 2026Updated 3 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- my maths toolkit☆11May 8, 2025Updated last year
- Make phylogenetic trees and lineages from the NCBI Taxonomy database☆14Mar 19, 2023Updated 3 years ago
- Build and deploy cross platform bioinformatic utilities with Rust.☆19Apr 1, 2025Updated last year
- nf-test utility functions☆12May 22, 2026Updated last month
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 10 months ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆32Aug 26, 2024Updated last year
- Defunct. Use https://github.com/Linuxbrew/docker☆14Jun 24, 2016Updated 10 years ago
- Rapidly extract reads from FASTX files based on taxonomic classification via Kraken2.☆15Jun 17, 2026Updated 3 weeks ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Jun 16, 2026Updated 3 weeks ago
- CLI tool for querying the Genome Taxonomy Database (GTDB). Batch search, genome cards, taxon lineages, and cross-release taxonomic compar…☆30Jun 9, 2026Updated last month
- A vec-backed tree structure with tree-specific generational indexes.☆20Aug 3, 2025Updated 11 months ago
- Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.☆19Jun 3, 2025Updated last year
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆54Jun 22, 2026Updated 2 weeks ago
- Parallelised and automated construction of metagenomic classifier databases of different tools☆21Jun 11, 2026Updated 3 weeks ago
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 8 months ago
- ☆15Nov 30, 2023Updated 2 years ago
- Mycelium API Gateway, the ultimate solution for secure, flexible, and multi-tenant API management☆22May 12, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SNP and indel calls from multiple sequence alignment (MSA)☆13Nov 11, 2022Updated 3 years ago
- Fast tool to build the core genome of prokaryotic genomes. Can handle large datasets. Dependencis: Usearch & Numpy☆10Nov 26, 2025Updated 7 months ago
- Just another minhash implementation.☆12May 28, 2026Updated last month
- HTTP client / server with limited dependencies☆24Nov 20, 2024Updated last year
- De novo metagenome assembler☆14Mar 29, 2023Updated 3 years ago
- Needleman-Wunsch Alignment in Go☆12Nov 9, 2020Updated 5 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆109Jun 12, 2026Updated 3 weeks ago