Rust crate to deal with phylogenetic trees
☆14Dec 3, 2025Updated 5 months ago
Alternatives and similar repositories for phylotree-rs
Users that are interested in phylotree-rs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 3 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆17Updated this week
- Development repo for pyani-plus (the next iteration of pyani)☆33May 1, 2026Updated last week
- ☆14Feb 9, 2026Updated 2 months ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆29Jul 21, 2025Updated 9 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Eukaryotic genome annotation software.☆25Apr 22, 2026Updated 2 weeks ago
- Fast and accurate Phylogeny estimation with self-attention Networks☆42Apr 19, 2025Updated last year
- Minimum plain text representation of kmer sets☆18Jan 30, 2025Updated last year
- A vec-backed tree structure with tree-specific generational indexes.☆41Mar 29, 2024Updated 2 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Nov 24, 2024Updated last year
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- An ultrafast and memory efficient tool for phylogenomics☆26Apr 17, 2026Updated 3 weeks ago
- Python language bindings for bwa☆12Mar 27, 2026Updated last month
- my maths toolkit☆11May 8, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Make phylogenetic trees and lineages from the NCBI Taxonomy database☆14Mar 19, 2023Updated 3 years ago
- Build and deploy cross platform bioinformatic utilities with Rust.☆19Apr 1, 2025Updated last year
- nf-test utility functions☆12Mar 5, 2026Updated 2 months ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆30Aug 26, 2024Updated last year
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 8 months ago
- Defunct. Use https://github.com/Linuxbrew/docker☆14Jun 24, 2016Updated 9 years ago
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated 3 months ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Apr 30, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Efficient and fast querying and parsing of GTDB's data☆29Aug 21, 2025Updated 8 months ago
- A vec-backed tree structure with tree-specific generational indexes.☆20Aug 3, 2025Updated 9 months ago
- Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.☆19Jun 3, 2025Updated 11 months ago
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆54Apr 14, 2026Updated 3 weeks ago
- Parallelised and automated construction of metagenomic classifier databases of different tools☆21Apr 30, 2026Updated last week
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 6 months ago
- ☆15Nov 30, 2023Updated 2 years ago
- Mycelium API Gateway, the ultimate solution for secure, flexible, and multi-tenant API management☆22Updated this week
- SNP and indel calls from multiple sequence alignment (MSA)☆13Nov 11, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Fast tool to build the core genome of prokaryotic genomes. Can handle large datasets. Dependencis: Usearch & Numpy☆10Nov 26, 2025Updated 5 months ago
- Just another minhash implementation.☆12Apr 28, 2026Updated last week
- HTTP client / server with limited dependencies☆24Nov 20, 2024Updated last year
- Needleman-Wunsch Alignment in Go☆12Nov 9, 2020Updated 5 years ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆36Apr 20, 2026Updated 2 weeks ago
- Detecting multi-genome synteny using minimizer graph mapping☆105Apr 27, 2026Updated last week
- Manipulate and generate figures for trees in Newick format☆22Jul 31, 2025Updated 9 months ago