RabbitBio / RabbitFXLinks
☆16Updated 2 years ago
Alternatives and similar repositories for RabbitFX
Users that are interested in RabbitFX are comparing it to the libraries listed below
Sorting:
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Updated 2 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆27Updated 6 months ago
- Optimal sequence-to-graph alignment with recombinations☆38Updated 3 months ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆55Updated last week
- Fast and exact gap-affine partial order alignment☆56Updated this week
- A SIMD-accelerated library to compute random minimizers☆33Updated last month
- Benchmarking pairwise aligners☆36Updated 9 months ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Updated 8 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- Rust bindings to the wavefront algorithm C implementation☆17Updated 3 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated last week
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 3 months ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆34Updated last week
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆37Updated 11 months ago
- ☆16Updated 2 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Updated 2 years ago
- ☆13Updated last week
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆11Updated 6 years ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆20Updated 2 weeks ago
- convert variation graph alignments to coverage maps over nodes☆26Updated last week
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 5 months ago
- GBWT in Rust☆43Updated 7 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Updated last year
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- Minimum plain text representation of kmer sets☆16Updated 9 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated last year
- Python language bindings for bwa☆11Updated last month