RabbitBio / RabbitFXLinks
☆16Updated 2 years ago
Alternatives and similar repositories for RabbitFX
Users that are interested in RabbitFX are comparing it to the libraries listed below
Sorting:
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆28Updated 9 months ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Updated 2 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Updated last month
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Fast and exact gap-affine partial order alignment☆58Updated this week
- Optimal sequence-to-graph alignment with recombinations☆39Updated 6 months ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Updated 10 months ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆36Updated 2 months ago
- A SIMD-accelerated library to compute random minimizers☆36Updated 2 weeks ago
- Benchmarking pairwise aligners☆36Updated 11 months ago
- Optimal distance lower bound k-mer sampling.☆12Updated last year
- Rust bindings to the wavefront algorithm C implementation☆17Updated 3 years ago
- A small, auxiliary index to massively improve parallel fastq parsing☆30Updated 3 weeks ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆23Updated 2 months ago
- ☆16Updated 2 years ago
- Rust library for processing sequencing reads.☆25Updated last year
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆17Updated 6 years ago
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 6 months ago
- ☆13Updated last month
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated 2 weeks ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated 2 weeks ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20Updated 4 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 7 months ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 5 years ago
- A FASTA/FASTQ format parser library☆20Updated last year
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 10 months ago