☆17Apr 6, 2023Updated 3 years ago
Alternatives and similar repositories for RabbitFX
Users that are interested in RabbitFX are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 3 months ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- Ultra-rapid detection of viral variants directly from sequencing data☆43Feb 17, 2026Updated 3 months ago
- A more efficient quality control tool for sequencing data☆33May 27, 2025Updated last year
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆24Nov 20, 2025Updated 6 months ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated last week
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆18Jun 23, 2025Updated 11 months ago
- Minimum plain text representation of kmer sets☆18Jan 30, 2025Updated last year
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 3 years ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆41Mar 9, 2026Updated 2 months ago
- A Rust implementation of the Quad Wavelet Tree☆52Apr 27, 2026Updated last month
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 8 months ago
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated 4 months ago
- Fast approximate string searching☆139Updated this week
- TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).☆14Feb 18, 2025Updated last year
- Fast and exact gap-affine partial order alignment☆68Apr 25, 2026Updated last month
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29May 31, 2026Updated last week
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆54May 10, 2026Updated 3 weeks ago
- The new version is available at https://github.com/RabbitBio/RabbitQCPlus☆25Jun 20, 2022Updated 3 years ago
- Mapping sequencing data to De Bruijn graphs, fast☆34Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- An extensible and performant aligner and read mapper☆75Updated this week
- Implementation of eBWT using Prefix-free parse (PFP)☆14Jul 14, 2025Updated 10 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆18May 18, 2026Updated 3 weeks ago
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- LMS algorithm for computing edit distance with SIMD optimizations☆11Mar 25, 2024Updated 2 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- Write-once-read-many table for large datasets.☆27Oct 5, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures☆12Jun 5, 2024Updated 2 years ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21May 31, 2026Updated last week
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- A SIMD-accelerated library to compute random minimizers☆44Apr 6, 2026Updated 2 months ago
- A Rust library for building modular, fast and compact indexes over genomic data☆12Nov 22, 2023Updated 2 years ago
- µbinfie blog☆19Jul 21, 2025Updated 10 months ago
- K-mer substring space decomposition☆44May 27, 2026Updated last week