COMBINE-lab / piscemLinks
Rust wrapper for the next generation (still currently in C++)
☆26Updated 3 weeks ago
Alternatives and similar repositories for piscem
Users that are interested in piscem are comparing it to the libraries listed below
Sorting:
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 7 months ago
- Tumour-only somatic mutation calling using long reads☆27Updated 7 months ago
- ☆15Updated last year
- Immuological gene typing and annotation for genome assembly☆37Updated 3 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 7 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 9 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 2 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 4 months ago
- a lexicographically-based GTF/GFF sorter☆35Updated last month
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated 2 weeks ago
- Long read aligner for cyclic and acyclic pangenome graphs☆37Updated last year
- ☆21Updated 3 months ago
- Genome browser hub for the T2T genomes and resources☆22Updated 2 months ago
- Singular Genomics Demultiplexing Tool☆16Updated last year
- Kmer Analysis of Pileups for Genotyping☆30Updated this week
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆13Updated 6 months ago
- Location of public benchmarking; primarily final results☆18Updated 4 months ago
- Fast and exact gap-affine partial order alignment☆51Updated 2 weeks ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 2 months ago
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 7 months ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 4 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆27Updated 6 months ago
- Snakemake pipeline for benchmarking read mappers☆16Updated last year
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- A FASTA/FASTQ format parser library☆20Updated last year
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated 2 months ago
- Metacompore is a snakemake pipeline running multiple RNA modifications detection tools for nanopore directRNA sequencing☆9Updated 4 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated last month