Just another minhash implementation.
☆13May 28, 2026Updated 2 months ago
Alternatives and similar repositories for jam-rs
Users that are interested in jam-rs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Parallel Construction of Suffix Arrays in Rust☆26Aug 7, 2026Updated last week
- NEFF Calculator and MSA File Converter☆15May 6, 2026Updated 3 months ago
- Sketch-based surveillance platform☆14Aug 5, 2026Updated last week
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Rust library for parsing, writing and manipulating Genbank sequence files☆24Apr 20, 2025Updated last year
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Jul 29, 2026Updated 2 weeks ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- A database for signatures of public genomic sources☆18Jul 18, 2026Updated 3 weeks ago
- ☆15Jul 14, 2025Updated last year
- A more efficient quality control tool for sequencing data☆33May 27, 2025Updated last year
- Snakemake with pytest example☆11Jul 18, 2020Updated 6 years ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated last month
- SWORD - a highly efficient protein database search☆26Jan 15, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- KubeDAL: Universal Data Access Layer for Kubernetes☆17Apr 14, 2026Updated 4 months ago
- Build sourmash databases for genbank.☆10May 4, 2023Updated 3 years ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆22Jul 22, 2026Updated 3 weeks ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- ☆14Dec 26, 2025Updated 7 months ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57May 29, 2024Updated 2 years ago
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆13Updated this week
- Python bindings for the TaxonKit library☆43Aug 3, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆28Jun 14, 2026Updated 2 months ago
- Python wrapper for wavefront alignment using WFA2-lib☆39Nov 19, 2024Updated last year
- Fast and exact gap-affine partial order alignment☆70Apr 25, 2026Updated 3 months ago
- ☆10Jun 16, 2022Updated 4 years ago
- Generation of OrthoDB protein sets for gene prediction experiments☆11Aug 8, 2024Updated 2 years ago
- Local alignment search with k-bounded matching statistics.☆24Aug 19, 2025Updated 11 months ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Dec 12, 2024Updated last year
- EnzyMM - Enzyme Motif Miner - Geometric matching of catalytic motifs in protein structures.☆43Updated this week
- Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes☆29Jul 26, 2026Updated 2 weeks ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated last month
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated last month
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆25Mar 7, 2026Updated 5 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated 2 years ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆27Mar 25, 2023Updated 3 years ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Jun 22, 2026Updated last month