aebruno / nwalgoLinks
Needleman-Wunsch Alignment in Go
☆12Updated 5 years ago
Alternatives and similar repositories for nwalgo
Users that are interested in nwalgo are comparing it to the libraries listed below
Sorting:
- Index and query k-mer matrices in BGZF☆12Updated 7 years ago
- Shared k-mer content between two genomes☆18Updated 2 years ago
- Minimum plain text representation of kmer sets☆16Updated 9 months ago
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- kaamer - protein identification based on amino acid kmers☆12Updated 2 years ago
- localised duplicate detection on patterned flow cells☆10Updated 6 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Updated 5 years ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Updated 6 years ago
- in silico plasmid extraction☆13Updated 8 years ago
- ☆13Updated 9 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated last year
- Tool for exploring sequence alignment algorithms☆13Updated last year
- de Bruijn graph cOrrectiOn from graph aLignment☆11Updated 5 years ago
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Updated 4 years ago
- ☆12Updated 5 months ago
- ☆16Updated 3 months ago
- Validation of sycnmers compared to minimizers☆11Updated 6 months ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 3 years ago
- ☆14Updated 2 years ago
- Write-once-read-many table for large datasets.☆27Updated 2 years ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆20Updated 3 weeks ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Updated 2 years ago
- Naive PCA for genotype data☆10Updated 9 years ago
- For bluntifying overlapped GFAs☆13Updated last year
- A database for signatures of public genomic sources☆18Updated 3 weeks ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- ☆13Updated 2 weeks ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago