aebruno / nwalgoLinks
Needleman-Wunsch Alignment in Go
☆12Updated 5 years ago
Alternatives and similar repositories for nwalgo
Users that are interested in nwalgo are comparing it to the libraries listed below
Sorting:
- Shared k-mer content between two genomes☆18Updated 2 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 5 years ago
- A database for signatures of public genomic sources☆18Updated last month
- ☆13Updated 10 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Updated 5 years ago
- in silico plasmid extraction☆13Updated 8 years ago
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Updated 4 years ago
- Bitpacked sequence trait and implementation☆16Updated 3 weeks ago
- Write-once-read-many table for large datasets.☆27Updated 2 years ago
- Minimum plain text representation of kmer sets☆16Updated last year
- Next Index to Query Kmer Intersection☆17Updated 3 years ago
- Index and query k-mer matrices in BGZF☆12Updated 7 years ago
- Visualization tool for (meta)genome assembly graphs☆22Updated this week
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Updated 7 years ago
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Updated 4 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated last month
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Updated 4 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated this week
- Minimum Bait Cover Toolkit Syotti.☆13Updated last year
- kaamer - protein identification based on amino acid kmers☆12Updated 2 years ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Updated 2 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Updated last year
- de Bruijn graph cOrrectiOn from graph aLignment☆11Updated 5 years ago
- Tool for exploring sequence alignment algorithms☆13Updated last year
- MetaCarvel: A scaffolder for metagenomes☆14Updated last year
- Nanopore read de-multiplexer☆13Updated 5 years ago
- Simulate mutations in genomes☆15Updated 5 years ago
- Simple-to-use interactive comparison of two bacterial genomes☆22Updated last week
- drunk on perbase pileups and lua expressions☆19Updated 2 months ago