aebruno / nwalgoLinks
Needleman-Wunsch Alignment in Go
☆12Updated 4 years ago
Alternatives and similar repositories for nwalgo
Users that are interested in nwalgo are comparing it to the libraries listed below
Sorting:
- Shared k-mer content between two genomes☆18Updated 2 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Minimum plain text representation of kmer sets☆16Updated 8 months ago
- Index and query k-mer matrices in BGZF☆12Updated 7 years ago
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Updated 5 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated last year
- ☆12Updated 4 months ago
- Just another minhash implementation.☆12Updated last month
- ☆13Updated last month
- Tool for exploring sequence alignment algorithms☆13Updated last year
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Updated 6 years ago
- ☆12Updated 10 months ago
- Validation of sycnmers compared to minimizers☆11Updated 5 months ago
- Fast and cache-efficient full-text pangenome index☆29Updated 2 weeks ago
- A database for signatures of public genomic sources☆18Updated 3 weeks ago
- ☆13Updated 9 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 2 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Updated 5 years ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆20Updated 2 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year
- Hierarchical binned indexed data store for on-disk genomic data.☆13Updated 9 months ago
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13Updated last year
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Updated last year
- ☆17Updated last year
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- Fast sequence distance estimates☆15Updated 2 months ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆19Updated last week
- Simple-to-use interactive comparison of two bacterial genomes☆16Updated last month
- localised duplicate detection on patterned flow cells☆10Updated 6 years ago