aebruno / nwalgoLinks
Needleman-Wunsch Alignment in Go
☆12Updated 5 years ago
Alternatives and similar repositories for nwalgo
Users that are interested in nwalgo are comparing it to the libraries listed below
Sorting:
- Shared k-mer content between two genomes☆18Updated 2 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated 2 years ago
- Minimum plain text representation of kmer sets☆16Updated 11 months ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 5 years ago
- Index and query k-mer matrices in BGZF☆12Updated 7 years ago
- Next Index to Query Kmer Intersection☆17Updated 2 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Updated 5 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Updated 5 years ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Updated 7 years ago
- in silico plasmid extraction☆13Updated 8 years ago
- ☆13Updated 10 years ago
- A database for signatures of public genomic sources☆18Updated 3 weeks ago
- Bitpacked sequence trait and implementation☆16Updated last week
- localised duplicate detection on patterned flow cells☆10Updated 6 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated 3 weeks ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Updated 4 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 3 years ago
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Updated 4 years ago
- For bluntifying overlapped GFAs☆13Updated last year
- ☆14Updated 8 months ago
- Naive PCA for genotype data☆10Updated 9 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…☆14Updated 9 years ago
- Tool for exploring sequence alignment algorithms☆13Updated last year
- Hierarchical binned indexed data store for on-disk genomic data.☆13Updated last year
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Updated 4 years ago
- Simulate mutations in genomes☆15Updated 5 years ago
- ☆17Updated last year