Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms
☆31Jan 22, 2026Updated 8 months ago
Alternatives and similar repositories for probminhash
Users that are interested in probminhash are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Aug 19, 2026Updated last month
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- Fast sequence distance estimates☆34Aug 24, 2026Updated last month
- Parallel Construction of Suffix Arrays in Rust☆26Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 5 years ago
- Bitpacked sequence trait and implementation☆19Aug 19, 2026Updated last month
- Simple and transparent support for compressed files.☆81Sep 9, 2026Updated 2 weeks ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- Fast Approximate Pattern Matching using Search Schemes☆20Jul 11, 2026Updated 2 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated 2 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 4 months ago
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- Bidirectional WFA (Paper)☆51May 20, 2024Updated 2 years ago
- Fast and exact gap-affine partial order alignment☆71Sep 16, 2026Updated last week
- ☆15Updated this week
- ☆14Jan 31, 2020Updated 6 years ago
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆29Updated this week
- An extensible and performant aligner and read mapper☆105Sep 15, 2026Updated last week
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- plane sweep filtering genome alignments☆24Updated this week
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- A command line utilty for working with BINSEQ files☆41Aug 25, 2026Updated 3 weeks ago
- 2bit file format implementation in Rust☆16Mar 27, 2026Updated 5 months ago
- Fast approximate string searching☆169Aug 11, 2026Updated last month
- ☆19Nov 21, 2024Updated last year
- Just another minhash implementation.☆13Sep 14, 2026Updated last week
- Tearing through FASTA/Q sequences☆39Jul 9, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Wavefront alignment algorithm (WFA) in Golang☆33Aug 21, 2026Updated last month
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 3 years ago
- A (Minimal) Perfect Hash Function based on irregular cuckoo hashing, retrieval, and overloading.☆20Sep 30, 2025Updated 11 months ago
- vector illustrations of BWT based searching on small strings☆16Apr 29, 2019Updated 7 years ago
- A general technique to reduce memory consumption and improve the performance of gap-affine and dual gap-affine sequence alignment algorit…☆17Jan 22, 2026Updated 8 months ago
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- ☆18Jul 21, 2026Updated 2 months ago