jheinz27 / breakinatorView external linksLinks
Tool to flag foldback and chimeric artifacts in long-read sequence alignment files
☆18Jan 21, 2026Updated 3 weeks ago
Alternatives and similar repositories for breakinator
Users that are interested in breakinator are comparing it to the libraries listed below
Sorting:
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Mar 3, 2025Updated 11 months ago
- consensus approach for community profiling with nanopore amplicon sequencing data☆15Sep 30, 2024Updated last year
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆12Jun 13, 2025Updated 8 months ago
- A small, auxiliary index to massively improve parallel fastq parsing☆30Updated this week
- Rust implementation of the Haskell Rampart library that determines how intervals relate to each other.☆12Apr 21, 2022Updated 3 years ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated last year
- Python language bindings for bwa☆12Nov 24, 2025Updated 2 months ago
- ☆14Jan 28, 2026Updated 2 weeks ago
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated 10 months ago
- Sketch phylogenetic trees and networks☆24Feb 5, 2026Updated last week
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 2 years ago
- ☆19Feb 15, 2025Updated 11 months ago
- Snakemake pipeline for benchmarking read mappers☆16Dec 11, 2023Updated 2 years ago
- ☆67Apr 9, 2024Updated last year
- ☆16Jan 15, 2025Updated last year
- strange cross-platform, performance-oriented and interactive pangenome and large graph visualization☆44Dec 1, 2025Updated 2 months ago
- tree visualization for tree + annotation data☆49Jun 17, 2025Updated 7 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Jan 21, 2026Updated 3 weeks ago
- ☆21Dec 26, 2025Updated last month
- Implicit Interval Tree with Interpolation Index☆42Jul 13, 2022Updated 3 years ago
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated 11 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Sep 2, 2025Updated 5 months ago
- CLANS_2 is a Python-based program for clustering sequences in the 2D or 3D space, based on their sequence similarities. CLANS visualizes …☆25Dec 5, 2024Updated last year
- ☆23Jul 23, 2023Updated 2 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- deploy a snakemake pipeline directly from version control (under development)☆24Jan 14, 2026Updated last month
- ☆21Jan 3, 2025Updated last year
- a python package for automated generation of phylogenetic trees from genbank files☆23Nov 11, 2025Updated 3 months ago
- CARE: Context-Aware Read Error correction for Illumina reads☆21Nov 1, 2023Updated 2 years ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 4 months ago
- DeepECtransformer☆29Oct 20, 2023Updated 2 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆66Updated this week
- JTK -- a regional diploid genome assembler☆25Oct 20, 2024Updated last year
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆57Aug 6, 2023Updated 2 years ago
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Jan 5, 2026Updated last month