Tool to flag foldback and chimeric artifacts in long-read sequence alignment files
☆41Apr 28, 2026Updated 2 months ago
Alternatives and similar repositories for breakinator
Users that are interested in breakinator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- A short tandem repeat (STR) genotyping and analysis toolkit for long reads☆19Updated this week
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆12Mar 3, 2025Updated last year
- a simple tool for listing conda environments with descriptions☆16Mar 28, 2025Updated last year
- Fast DNA search and [host] depletion using minimizers☆114Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆14Mar 28, 2018Updated 8 years ago
- fastcat is a single executable with subcommands for FASTQ and BAM summary/statistics workflows. It was originally written to santize and …☆57Mar 4, 2026Updated 4 months ago
- deploy a snakemake pipeline directly from version control (under development)☆26Jun 18, 2026Updated 2 weeks ago
- tree visualization for tree + annotation data☆62Jun 17, 2025Updated last year
- Tandem repeat genotyping from long reads☆25Jun 29, 2026Updated last week
- ☆11Mar 11, 2025Updated last year
- ☆11Jul 4, 2022Updated 4 years ago
- A BioRuby-based course for the Computational Biology M.Sc. Programme☆10Jul 20, 2023Updated 2 years ago
- ☆16Jan 28, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 3 years ago
- Sketch phylogenetic trees and networks☆26Jun 25, 2026Updated last week
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 4 months ago
- Python language bindings for bwa☆12Jun 16, 2026Updated 2 weeks ago
- consensus approach for community profiling with nanopore amplicon sequencing data☆17Sep 30, 2024Updated last year
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated last year
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆13Mar 16, 2026Updated 3 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆72May 23, 2026Updated last month
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆21Feb 15, 2025Updated last year
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆26Mar 11, 2026Updated 3 months ago
- Remove lambda phage reads from a fastq file☆29Jan 16, 2023Updated 3 years ago
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- Snakemake pipeline for benchmarking read mappers☆16Dec 11, 2023Updated 2 years ago
- ☆67Apr 9, 2024Updated 2 years ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 10 months ago
- Rust implementation of the Haskell Rampart library that determines how intervals relate to each other.☆11Apr 21, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Extremely fast and accurate Nanopore demultiplexing☆98Jun 27, 2026Updated last week
- The official Bento distribution - orchestration and deployment infrastructure for the Bento platform.☆12Jun 20, 2026Updated 2 weeks ago
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- ☆30Mar 6, 2025Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54May 16, 2023Updated 3 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Apr 20, 2026Updated 2 months ago
- DeepECtransformer☆31Oct 20, 2023Updated 2 years ago