luntergroup / bamsplit
Split a BAM file by haplotype support
☆16Updated 7 years ago
Alternatives and similar repositories for bamsplit:
Users that are interested in bamsplit are comparing it to the libraries listed below
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- ☆16Updated 2 weeks ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 9 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- ☆9Updated 2 years ago
- Functions to compare a SV call sets against a truth set.☆28Updated 9 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Benchmark structural variant calls against a reference set☆17Updated 3 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆12Updated 3 years ago
- ☆11Updated last year
- Hidden Markov Model based Copy number caller☆20Updated 3 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Fast in-silico normalization algorithm for NGS data☆22Updated 3 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- Unfazed by genomic variant phasing☆26Updated 8 months ago
- Benchmarking variant calling in polyploids☆13Updated 3 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated 8 months ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- ☆20Updated last year
- VCF files of SVs using long-read sequencing (LRS).☆21Updated 3 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated last month
- This is the Haplotypo repository☆20Updated 8 months ago
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 6 years ago