luntergroup / bamsplitLinks
Split a BAM file by haplotype support
☆16Updated 7 years ago
Alternatives and similar repositories for bamsplit
Users that are interested in bamsplit are comparing it to the libraries listed below
Sorting:
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 5 years ago
- ☆16Updated 6 months ago
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 months ago
- ☆20Updated last year
- Functions to compare a SV call sets against a truth set.☆30Updated 3 weeks ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Benchmarking variant calling in polyploids☆15Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Updated 8 months ago
- ☆11Updated 2 years ago
- Ultra-efficient mapping-free structural variation genotyper☆19Updated 3 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last month
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated last month
- Unfazed by genomic variant phasing☆27Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- CLI to automate Nextflow pipeline testing☆12Updated 2 weeks ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Location of public benchmarking; primarily final results☆18Updated 4 months ago
- ☆12Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year