Alternatives and similar repositories for CONCOMPRA

Users that are interested in CONCOMPRA are comparing it to the libraries listed below

• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆35Updated 4 months ago
• MHH-RCUG / nf_wochenende
  A nextflow version of the Wochenende reference metagenome binning and visualization pipeline
  ☆15Updated 10 months ago
• FOI-Bioinformatics / nanometa_live
  A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…
  ☆18Updated last year
• songlab-cal / swga2
  ☆17Updated 2 years ago
• salzberg-lab / PSAURON
  PSAURON is a machine learning model for rapid assessment of protein coding gene annotation
  ☆41Updated last month
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆29Updated 2 years ago
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆29Updated last year
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆67Updated 2 weeks ago
• JLSteenwyk / orthofisher
  a broadly applicable tool for automated gene identification and retrieval
  ☆32Updated 11 months ago
• genomic-medicine-sweden / TRANA
  A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.
  ☆16Updated last week
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 6 months ago
• JensUweUlrich / Taxor
  Fast and space-efficient taxonomic classification of long reads
  ☆43Updated 2 months ago
• JensUweUlrich / ReadBouncer
  Fast and scalable nanopore adaptive sampling
  ☆34Updated 2 years ago
• balabanmetin / uDance
  ☆42Updated last year
• beardymcjohnface / Koverage
  Quickly get coverage statistics given reads and an assembly
  ☆16Updated last year
• mathjeff / Mapper
  Genomic sequence aligner
  ☆31Updated 2 weeks ago
• niemasd / ViralConsensus
  Fast viral consensus genome reconstruction
  ☆25Updated 4 months ago
• DNKonanov / Snapper
  snapper
  ☆13Updated last year
• josephpetrone / RESCUE
  Resolving Species Level Classification Using Emu
  ☆14Updated last year
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆23Updated 3 weeks ago
• LuoGroup2023 / PanTax
  PanTax: Strain-level metagenomic profiling using pangenome graphs
  ☆43Updated 2 months ago
• cmmr / EsViritu
  Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
  ☆42Updated last month
• iqbal-lab-org / pling
  Plasmid analysis using rearrangement distances
  ☆46Updated 2 months ago
• dvdylus / read2tree
  ☆20Updated 3 years ago
• leylabmpi / SynTracker
  SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…
  ☆35Updated last month
• taxburst / taxburst
  sunburst plots for taxonomy - working to update Krona
  ☆41Updated last month
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆50Updated 2 years ago
• danny-wilson / genomegaMap
  Within-species genome-wide dN/dS estimation from very many genomes
  ☆21Updated 5 years ago
• treangenlab / Olivar
  Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens
  ☆33Updated 3 weeks ago
• husonlab / phylosketch2
  Sketch phylogenetic trees and networks
  ☆23Updated this week