willem-stock / CONCOMPRALinks
consensus approach for community profiling with nanopore amplicon sequencing data
☆15Updated last year
Alternatives and similar repositories for CONCOMPRA
Users that are interested in CONCOMPRA are comparing it to the libraries listed below
Sorting:
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆15Updated 11 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 5 months ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Updated 8 months ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20Updated last year
- A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.☆16Updated last week
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆43Updated 2 months ago
- ☆20Updated 3 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆37Updated 2 months ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Find Unique genomic Regions☆32Updated last month
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆23Updated 3 weeks ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- Within-species genome-wide dN/dS estimation from very many genomes☆22Updated 5 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 2 months ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Updated 3 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 11 months ago
- Genome-Genome circle synteny☆25Updated last year
- Generating UTRs from SHort Reads☆12Updated 5 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 2 months ago
- sunburst plots for taxonomy - working to update Krona☆41Updated 2 months ago
- Consensus genome annotation using OMA☆27Updated 5 months ago
- Quality control plotting for long reads☆10Updated last year
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Updated last year
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 2 months ago
- ☆26Updated 4 years ago
- ☆17Updated 2 years ago