Alternatives and similar repositories for CONCOMPRA

Users that are interested in CONCOMPRA are comparing it to the libraries listed below

• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆33Updated 3 weeks ago
• MHH-RCUG / nf_wochenende
  A nextflow version of the Wochenende reference metagenome binning and visualization pipeline
  ☆14Updated 7 months ago
• dvdylus / read2tree
  ☆20Updated 3 years ago
• FOI-Bioinformatics / nanometa_live
  A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…
  ☆16Updated 9 months ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 2 months ago
• JensUweUlrich / ReadBouncer
  Fast and scalable nanopore adaptive sampling
  ☆34Updated 2 years ago
• leylabmpi / SynTracker
  SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…
  ☆32Updated 5 months ago
• TravisWheelerLab / BATH
  Better Alignments with Translated HMMER
  ☆21Updated this week
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• niemasd / ViralConsensus
  Fast viral consensus genome reconstruction
  ☆23Updated last week
• mmpust / raspir
  Raspir, the rare species identifier
  ☆11Updated last year
• KoslickiLab / YACHT
  A mathematically characterized hypothesis test for organism presence/absence in a metagenome
  ☆30Updated last month
• salzberg-lab / PSAURON
  PSAURON is a machine learning model for rapid assessment of protein coding gene annotation
  ☆33Updated 3 months ago
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆28Updated 2 years ago
• karubiotools / getSequenceInfo
  Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories
  ☆14Updated 3 months ago
• JLSteenwyk / orthofisher
  a broadly applicable tool for automated gene identification and retrieval
  ☆32Updated 7 months ago
• lmc297 / bactaxR
  Bacterial taxonomy construction and evaluation in R
  ☆13Updated last year
• aesheppard / TETyper
  transposable element typing pipeline
  ☆18Updated last year
• beardymcjohnface / Koverage
  Quickly get coverage statistics given reads and an assembly
  ☆13Updated last year
• martinghunt / ziplign
  Simple-to-use interactive comparison of two bacterial genomes
  ☆16Updated 3 weeks ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• JensUweUlrich / Taxor
  Fast and space-efficient taxonomic classification of long reads
  ☆43Updated 2 months ago
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆30Updated last year
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆58Updated last week
• HaploConduct / HaploConduct
  Haplotype-aware genome assembly toolkit
  ☆29Updated 5 years ago
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆25Updated 8 months ago
• josephpetrone / RESCUE
  Resolving Species Level Classification Using Emu
  ☆13Updated last year
• songlab-cal / swga2
  ☆17Updated last year
• mathjeff / Mapper
  Genomic sequence aligner
  ☆26Updated last week
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆30Updated 3 months ago