consensus approach for community profiling with nanopore amplicon sequencing data
☆18Sep 30, 2024Updated 2 years ago
Alternatives and similar repositories for CONCOMPRA
Users that are interested in CONCOMPRA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing☆16Oct 9, 2024Updated 2 years ago
- kmer-based software for detecting bacterial strain genomes inside metagenomes☆12Dec 11, 2024Updated last year
- dada2 formatted nifH database☆13May 17, 2024Updated 2 years ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated 2 years ago
- Amplicon sequencing variants and taxonomic profiling from modern nanopore / HiFi long read amplicons.☆70Oct 10, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Simple Python interface to CoverM's fast coverage estimation functions☆11Dec 20, 2024Updated last year
- R package for distilling functional annotations of bacterial genomes and metagenomes☆12Feb 27, 2025Updated last year
- ☆20Nov 17, 2025Updated 11 months ago
- This is the DataHarmonizer spreadsheet web application bundled with pathogen genomics data entry and validation templates☆13May 21, 2026Updated 5 months ago
- ☆13May 27, 2025Updated last year
- ☆27Jun 20, 2023Updated 3 years ago
- Leviathan: Fast, memory-efficient, and scalable taxonomic and pathway profiling for (pan)genome-resolved metagenomics and metatranscripto…☆30Oct 26, 2026Updated last week
- Graph-based assembly phasing☆102Nov 25, 2025Updated 11 months ago
- ☆101Apr 5, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.☆13Sep 3, 2024Updated 2 years ago
- Panaln: Indexing pangenome for read alignment☆10Apr 16, 2025Updated last year
- A high-resolution long-read metagenome assembler for even noisy reads. Myloasm assembles strain-resolved, circular + complete genomes fro…☆176Oct 11, 2026Updated 3 weeks ago
- Realtime base modification frequency tool☆15Sep 16, 2025Updated last year
- Taxonomic Reconstruction and Analysis of NGS Amplicons - A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads…☆24Oct 27, 2026Updated last week
- ☆15Jun 23, 2026Updated 4 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆63Jul 5, 2026Updated 3 months ago
- ☆12Jul 24, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- PAQman is a tool for a reference-free and comprehensive evaluation of genome assemblies☆10Sep 5, 2026Updated last month
- ☆12Aug 17, 2024Updated 2 years ago
- ☆22Apr 20, 2026Updated 6 months ago
- A newly designed version of Bamsnap with Long Read Support (LRS) which inspired by bamsnap (https://github.com/parklab/bamsnap)☆14Oct 13, 2026Updated 3 weeks ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated 2 years ago
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- A GUI tools for Gap closed based on assembly graph☆14Nov 4, 2025Updated 11 months ago
- ☆11Feb 16, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆23Aug 13, 2026Updated 2 months ago
- A comprehensive prokaryotic genome annotation pipeline☆92Oct 12, 2026Updated 3 weeks ago
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 6 years ago
- Pangenome graph-based genome inference☆14Jul 24, 2025Updated last year
- DegenPrimer is a tool to check the quality of degenerate primers by simulating PCR☆17May 12, 2022Updated 4 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆112Sep 12, 2026Updated last month
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆39Mar 5, 2023Updated 3 years ago