CLANS_2 is a Python-based program for clustering sequences in the 2D or 3D space, based on their sequence similarities. CLANS visualizes the dynamic clustering process and enables the user to interactively control it and explore the cluster map in various ways.
☆28Dec 5, 2024Updated last year
Alternatives and similar repositories for CLANS
Users that are interested in CLANS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Virus Protein Structural Analysis Toolkit☆15Sep 9, 2024Updated 2 years ago
- Detection of remote homology by comparison of protein language model representations☆65Dec 16, 2024Updated last year
- Pipeline for exploring protein families using homology based or vector representation based methods to generate clusters in sequence spac…☆18Jul 27, 2026Updated 2 months ago
- Python package to manage protein structures and their annotations☆46Mar 18, 2026Updated 6 months ago
- A Python framework for structural bioinformatics.☆14Jan 20, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast and accurate prediction of coiled coil domains in protein sequences. ☆27Dec 17, 2023Updated 2 years ago
- Viral protein family functional prediction using protein language models☆23Jan 6, 2026Updated 9 months ago
- ☆32Updated this week
- Graphical Representation of Ancestral Sequence Predictions☆15Mar 6, 2023Updated 3 years ago
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆192Oct 7, 2025Updated last year
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆20Oct 19, 2023Updated 2 years ago
- ☆57Sep 17, 2026Updated 3 weeks ago
- Tools for analyzing trees☆13Apr 16, 2025Updated last year
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Aug 12, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- CATH: high-throughput protein structure/function annotations☆12Dec 17, 2019Updated 6 years ago
- ☆22Jul 14, 2023Updated 3 years ago
- Locate antiviral defence systems in prokaryotic genomes☆78Oct 22, 2024Updated last year
- ☆20Updated this week
- ☆34Dec 20, 2023Updated 2 years ago
- ☆37Dec 6, 2023Updated 2 years ago
- Clustering tool optimized for sparse distance matrices: ~16M elements with ~190M connections clustered in minutes.☆16Sep 12, 2026Updated last month
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆31Mar 4, 2025Updated last year
- Automated construction of protein chimeras and their analysis.☆15Sep 29, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Deep learning based prediction of pi-helices in protein sequences☆11Mar 24, 2023Updated 3 years ago
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆13May 28, 2021Updated 5 years ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆18Jul 5, 2019Updated 7 years ago
- Systematic search of all known anti-phage systems.☆187Sep 1, 2026Updated last month
- A simple program to classify the lifestyle of phages.☆18May 22, 2023Updated 3 years ago
- Supporting code for uncultivated gut virus manuscript☆81Jul 17, 2023Updated 3 years ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆26May 14, 2026Updated 4 months ago
- ☆16Apr 3, 2025Updated last year
- ☆45Aug 29, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Non-sequential structural alignment program for protein structure☆19Apr 10, 2026Updated 6 months ago
- ☆33Jul 14, 2021Updated 5 years ago
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Oct 25, 2021Updated 4 years ago
- HydrAMP: a deep generative model for antimicrobial peptide discovery☆61Nov 26, 2024Updated last year
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆188Mar 17, 2026Updated 6 months ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆38May 25, 2026Updated 4 months ago
- Integrative virome pipeline☆14Nov 4, 2024Updated last year