inbalpaz / CLANS
CLANS_2 is a Python-based program for clustering sequences in the 2D or 3D space, based on their sequence similarities. CLANS visualizes the dynamic clustering process and enables the user to interactively control it and explore the cluster map in various ways.
☆17Updated last month
Alternatives and similar repositories for CLANS:
Users that are interested in CLANS are comparing it to the libraries listed below
- Discovery of conserved gene clusters in multiple genomes☆58Updated 2 weeks ago
- Protein structure alignment and search algorithm☆50Updated this week
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆30Updated 3 weeks ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated last year
- Protein Sequence Annotation with Language Models☆19Updated 3 months ago
- Python framework for doing ancestral sequence reconstruction☆37Updated 6 months ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last year
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆46Updated last week
- ☆11Updated last month
- Software for predicting translation initiation rates in bacteria☆20Updated 2 months ago
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆35Updated last month
- snakemake pipeline for creating trees from sequence sets☆70Updated last week
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆20Updated 8 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆21Updated 2 years ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated last year
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆18Updated 7 months ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆20Updated last month
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆23Updated this week
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- ☆15Updated 10 months ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆111Updated last month
- UniProt Id Mapping through API☆32Updated 3 months ago
- Transmembrane proteins predicted through Language Model embeddings☆32Updated last week
- Detection of remote homology by comparison of protein language model representations☆47Updated last month
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆32Updated 4 months ago
- Attentive deep learning model for antimicrobial peptide prediction☆41Updated 3 months ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆55Updated 4 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆38Updated last month
- Fast protein domain structure embedding+search tool☆11Updated 2 weeks ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago