inbalpaz / CLANSLinks
CLANS_2 is a Python-based program for clustering sequences in the 2D or 3D space, based on their sequence similarities. CLANS visualizes the dynamic clustering process and enables the user to interactively control it and explore the cluster map in various ways.
☆24Updated last year
Alternatives and similar repositories for CLANS
Users that are interested in CLANS are comparing it to the libraries listed below
Sorting:
- Protein structure alignment and search algorithm☆77Updated this week
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆18Updated last year
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆37Updated last month
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆22Updated 8 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆29Updated 9 months ago
- Python framework for doing ancestral sequence reconstruction☆42Updated last year
- Software for predicting translation initiation rates in bacteria☆30Updated 5 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 7 months ago
- Generation and updating of protein families☆21Updated 3 weeks ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 months ago
- UniProt Id Mapping through API☆36Updated 3 months ago
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆34Updated last year
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Updated 3 months ago
- Virus Protein Structural Analysis Toolkit☆14Updated last year
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆61Updated 9 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆23Updated 3 years ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆82Updated last month
- Protein Sequence Annotation with Language Models