A short tandem repeat (STR) genotyping and analysis toolkit for long reads
☆18Mar 20, 2026Updated this week
Alternatives and similar repositories for strkit
Users that are interested in strkit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tandem repeat genotyping from long reads☆21Mar 12, 2026Updated 2 weeks ago
- ☆13Apr 18, 2022Updated 3 years ago
- The PanGenome Graph Builder☆16Jul 17, 2024Updated last year
- MethPhaser: methylation-based haplotype phasing of human genomes☆54Mar 5, 2025Updated last year
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆37Jan 21, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Kmer Analysis of Pileups for Genotyping☆37Mar 6, 2026Updated 3 weeks ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 5 years ago
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 3 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆12Mar 16, 2026Updated last week
- Tandem repeat expansion detection or genotyping from long-read alignments☆149Nov 24, 2025Updated 4 months ago
- Tandem repeat genotyping with long reads☆35Sep 23, 2025Updated 6 months ago
- Genotype likelihood simulator for VCF/BCF files☆16May 7, 2025Updated 10 months ago
- NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data☆19Jan 13, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Automated Detection and Qualification of Differential Methylation☆16Nov 21, 2023Updated 2 years ago
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 10 years ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆13Jun 10, 2022Updated 3 years ago
- ☆29Aug 7, 2025Updated 7 months ago
- Topsicle utilizes abundance of telomere pattern k-mers to estimate telomere length in long read.☆20Mar 2, 2026Updated 3 weeks ago
- A machine learning tool to predict tandem repeat pathogenicity☆12Jan 2, 2024Updated 2 years ago
- A bioinformatics tool for working with modified bases☆257Jan 19, 2026Updated 2 months ago
- A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests and viral simulations at scale. Related manuscr…☆15Mar 14, 2026Updated last week
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Application of pan-genome for population☆116Oct 26, 2025Updated 5 months ago
- A pipeline creation tool using Snakemake☆13Updated this week
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Nov 25, 2024Updated last year
- Flexible linear mixed model framework for Genome Wide Association Studies☆18Nov 6, 2025Updated 4 months ago
- Highly Open Workflow for Annotation & Ranking toward genomic variant Discovery☆12Mar 4, 2026Updated 3 weeks ago
- expressions on VCFs☆91Mar 17, 2026Updated last week
- WDL workflows for variant calling and assembly using ONT☆39Mar 17, 2026Updated last week
- A toolkit for exploring regions of variation in pangenomes☆14Feb 14, 2026Updated last month
- Tandem repeat genotyping and visualization from PacBio HiFi data☆133Dec 8, 2025Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Mar 19, 2026Updated last week
- A segmentation approach to analyze DNA methylation patterns and identify differentially methylation regions from whole-genome datasets☆20Feb 16, 2026Updated last month
- Basic UPD caller☆12Aug 23, 2021Updated 4 years ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆240Mar 4, 2026Updated 3 weeks ago
- vembrane filters VCF records using python expressions☆69Mar 17, 2026Updated last week
- Structural variant toolkit for VCFs☆401Updated this week
- ☆33Updated this week