davidlougheed / strkitLinks
A short tandem repeat (STR) genotyping and analysis toolkit for long reads
☆16Updated 2 weeks ago
Alternatives and similar repositories for strkit
Users that are interested in strkit are comparing it to the libraries listed below
Sorting:
- A long-read analysis toolbox for cancer and population genomics☆23Updated 5 months ago
- Variant annotation and merging pipeline☆40Updated 4 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 7 months ago
- A tutorial on structural variant calling for short read sequencing data☆38Updated last year
- Joint structural variant and copy number variant caller for HiFi sequencing data☆65Updated last month
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆25Updated last year
- ☆31Updated last year
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Updated last week
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Working space for the GIAB TR benchmarking project☆23Updated last year
- ☆33Updated 3 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆45Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated 3 weeks ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Updated 2 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 3 weeks ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 9 months ago
- ☆49Updated last year
- Short Tandem Repeat disease loci resource☆24Updated this week
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Kmer Analysis of Pileups for Genotyping☆34Updated this week
- ☆38Updated 2 months ago
- SV genotyping with long reads☆40Updated 2 years ago
- ☆36Updated last year
- Structural variant (SV) analysis tools☆39Updated last year
- De novo tandem repeat calling from PacBio HiFi data☆19Updated this week
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Ploidy agnostic phasing pipeline and algorithm☆48Updated last year
- WDL workflows for variant calling and assembly using ONT☆38Updated 2 months ago