☆14Mar 28, 2018Updated 8 years ago
Alternatives and similar repositories for treemmer-animate
Users that are interested in treemmer-animate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python tool to reduce size and redundancy of phylogenetic datasets☆56Dec 5, 2025Updated 8 months ago
- ☆11Sep 16, 2021Updated 4 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 6 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Jun 17, 2022Updated 4 years ago
- Python module to manipulate and visualize minimap2's cs tag☆11Jul 28, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The gview wiki migrated to GitHub.☆12Sep 3, 2020Updated 5 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54May 16, 2023Updated 3 years ago
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆43Jul 1, 2026Updated last month
- Evolution simulator with extinct lineages☆25Apr 3, 2025Updated last year
- Bact-Builder: Microbial de novo genome assembly pipeline☆13Dec 5, 2022Updated 3 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆16Jun 6, 2024Updated 2 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆44Jul 2, 2026Updated last month
- Super snazzy online phylogenetic tree viewer with automatic customization using simple, tab-separated text files.☆30Apr 10, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- General purpose tools for every-day sequencing bioinformatics. If you use any of these tools, please acknowledge this repository (there a…☆12Oct 13, 2020Updated 5 years ago
- An R package designed for drawing gene arrow maps☆99Sep 29, 2025Updated 10 months ago
- Code for detecting genomic island insertions in clades of microbes.☆19Sep 14, 2023Updated 2 years ago
- visualization of phylogenetic output files☆15Oct 23, 2023Updated 2 years ago
- ☆27Jun 20, 2023Updated 3 years ago
- Simple R utilities for working with HMMER☆19Oct 3, 2024Updated last year
- ☆16Jan 28, 2026Updated 6 months ago
- [ACL 2024] FactPICO☆12Feb 26, 2024Updated 2 years ago
- Uses cDBG to count unitigs in bacterial populations☆18Feb 15, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Diploid genome assembly analysis tools☆14Sep 19, 2024Updated last year
- Genome comparison via de Bruijn graph. To get the latest stable version, please visit our site.☆70Oct 29, 2020Updated 5 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆24Apr 9, 2026Updated 4 months ago
- Within-species genome-wide dN/dS estimation from very many genomes☆24Oct 26, 2020Updated 5 years ago
- forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research☆42Updated this week
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Feb 15, 2019Updated 7 years ago
- Lightweight python library for predicting the difficulty of alignments in phylogenetics☆26Dec 6, 2025Updated 8 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆138Updated this week
- This bartender version could handle arbitrary length of barcode☆33Jan 6, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)☆12Aug 6, 2023Updated 3 years ago
- que paquete☆10Jul 17, 2024Updated 2 years ago
- Port of Python's pdfminer to Lisp☆15Jan 30, 2016Updated 10 years ago
- A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).☆19Jul 10, 2018Updated 8 years ago
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆128Updated this week
- Scripts to reproduce TrioBinning manuscript☆18Mar 31, 2020Updated 6 years ago
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 6 years ago