thackl / treemmer-animateLinks
☆13Updated 7 years ago
Alternatives and similar repositories for treemmer-animate
Users that are interested in treemmer-animate are comparing it to the libraries listed below
Sorting:
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Genome size estimation from long read overlaps☆56Updated last month
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆19Updated 7 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 8 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 3 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 7 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 8 months ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 11 months ago
- Genomewide Epistasis Analysis on Bacteria☆14Updated 3 weeks ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 4 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 3 weeks ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 2 years ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 6 months ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆33Updated 2 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated this week
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆25Updated last month
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 3 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆22Updated 2 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 7 months ago
- Gene tree - species tree reconciliation from gene tree distributions☆29Updated this week
- Within-species genome-wide dN/dS estimation from very many genomes☆20Updated 4 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Updated 8 months ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated 10 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated 2 weeks ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated last month