☆13Mar 28, 2018Updated 7 years ago
Alternatives and similar repositories for treemmer-animate
Users that are interested in treemmer-animate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python tool to reduce size and redundancy of phylogenetic datasets☆50Dec 5, 2025Updated 3 months ago
- ☆11Sep 16, 2021Updated 4 years ago
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆37Jan 21, 2026Updated 2 months ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 6 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Jun 17, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Python module to manipulate and visualize minimap2's cs tag☆11Jul 28, 2024Updated last year
- The gview wiki migrated to GitHub.☆11Sep 3, 2020Updated 5 years ago
- An R package designed for drawing gene arrow maps☆97Sep 29, 2025Updated 5 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- Uses cDBG to count unitigs in bacterial populations☆16Feb 15, 2023Updated 3 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54May 16, 2023Updated 2 years ago
- ☆15Jan 28, 2026Updated last month
- Bact-Builder: Microbial de novo genome assembly pipeline☆13Dec 5, 2022Updated 3 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Jun 6, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Sep 23, 2025Updated 6 months ago
- General purpose tools for every-day sequencing bioinformatics. If you use any of these tools, please acknowledge this repository (there a…☆12Oct 13, 2020Updated 5 years ago
- Evolution simulator with extinct lineages☆25Apr 3, 2025Updated 11 months ago
- visualization of phylogenetic output files☆14Oct 23, 2023Updated 2 years ago
- ☆25Jun 20, 2023Updated 2 years ago
- Simple R utilities for working with HMMER☆19Oct 3, 2024Updated last year
- Code for detecting genomic island insertions in clades of microbes.☆19Sep 14, 2023Updated 2 years ago
- Genome comparison via de Bruijn graph. To get the latest stable version, please visit our site.☆69Oct 29, 2020Updated 5 years ago
- ☆12Feb 26, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Diploid genome assembly analysis tools☆14Sep 19, 2024Updated last year
- a python package for automated generation of phylogenetic trees from genbank files☆23Nov 11, 2025Updated 4 months ago
- Super snazzy online phylogenetic tree viewer with automatic customization using simple, tab-separated text files.☆30Apr 10, 2023Updated 2 years ago
- Within-species genome-wide dN/dS estimation from very many genomes☆23Oct 26, 2020Updated 5 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆58Jan 7, 2026Updated 2 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Feb 15, 2019Updated 7 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆122Updated this week
- forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research☆37Mar 5, 2026Updated 2 weeks ago
- Scripts to reproduce TrioBinning manuscript☆17Mar 31, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Workflow for detecting genome-wide horizontal gene transfers☆10May 29, 2018Updated 7 years ago
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated last year
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆122Mar 17, 2026Updated last week
- A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).☆19Jul 10, 2018Updated 7 years ago
- ☆26Aug 10, 2021Updated 4 years ago
- Port of Python's pdfminer to Lisp☆15Jan 30, 2016Updated 10 years ago
- Script that labels phylogenetic clades based on the clade of the nearest neighbor using patristic distances determined from the tree.☆15Dec 11, 2024Updated last year