☆16Jan 28, 2026Updated 5 months ago
Alternatives and similar repositories for clusty
Users that are interested in clusty are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆110Jul 7, 2026Updated 2 weeks ago
- ☆10Jun 9, 2025Updated last year
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆22Jul 11, 2026Updated last week
- Strain-level haplotyping for metagenomes with short or long-reads.☆69Apr 10, 2025Updated last year
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated last year
- AlfaPang builds pangenome graphs without alignments or references.☆17Nov 7, 2025Updated 8 months ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆23Nov 22, 2019Updated 6 years ago
- Rust crate to deal with phylogenetic trees☆14Dec 3, 2025Updated 7 months ago
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated last year
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆180Apr 6, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 8 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Visualize microbial evolution at the SNP level!☆16Aug 12, 2025Updated 11 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆109Jun 12, 2026Updated last month
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated last month
- ☆19May 10, 2023Updated 3 years ago
- De novo genome assembly for long reads using an overlap graph☆22Jul 3, 2026Updated 2 weeks ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆22Jan 22, 2026Updated 5 months ago
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated last week
- Fast and space-efficient taxonomic classification of long reads☆45Updated this week
- Split k-mer analysis – version 2☆105Jul 9, 2026Updated last week
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆94Updated this week
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆136Updated this week
- ☆18Oct 7, 2024Updated last year
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Jun 15, 2026Updated last month
- Needleman-Wunsch Alignment in Go☆12Nov 9, 2020Updated 5 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆60Jul 5, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Plasmid analysis using rearrangement distances☆56Updated this week
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 11 months ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆109Jun 2, 2026Updated last month
- alignment-free coverage calculation for metagenomic binning >100 times faster☆53May 8, 2026Updated 2 months ago
- Chimera: A Versatile Metagenomic Classification Tool☆21Updated this week
- Methods to determine sequence element (unitig) presence/absence☆26Mar 6, 2026Updated 4 months ago