☆16Jan 28, 2026Updated 7 months ago
Alternatives and similar repositories for clusty
Users that are interested in clusty are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆110Jul 7, 2026Updated last month
- ☆10Jun 9, 2025Updated last year
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆24Jul 11, 2026Updated last month
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- AlfaPang builds pangenome graphs without alignments or references.☆17Nov 7, 2025Updated 9 months ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Nov 22, 2019Updated 6 years ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 9 months ago
- Rust crate to deal with phylogenetic trees☆14Aug 22, 2026Updated last week
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated last year
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆182Jul 22, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Visualize microbial evolution at the SNP level!☆16Aug 12, 2025Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆70Apr 10, 2025Updated last year
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated 3 months ago
- ☆19May 10, 2023Updated 3 years ago
- De novo genome assembly for long reads using an overlap graph☆24Jul 3, 2026Updated last month
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Aug 19, 2026Updated last week
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 5 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Fast and space-efficient taxonomic classification of long reads☆46Jul 16, 2026Updated last month
- Split k-mer analysis – version 2☆105Jul 9, 2026Updated last month
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆96Aug 21, 2026Updated last week
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆138Aug 12, 2026Updated 2 weeks ago
- ☆18Oct 7, 2024Updated last year
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Updated this week
- Needleman-Wunsch Alignment in Go☆12Nov 9, 2020Updated 5 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆63Jul 5, 2026Updated last month
- ☆21Feb 15, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Next Index to Query Kmer Intersection