Clustering tool optimized for sparse distance matrices: ~16M elements with ~190M connections clustered in minutes.
☆16Sep 12, 2026Updated last month
Alternatives and similar repositories for clusty
Users that are interested in clusty are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- How many distinct k-mers are there in a sequence?☆11Feb 4, 2026Updated 8 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) among virus and bacteria genomes☆13Sep 12, 2026Updated last month
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆112Sep 12, 2026Updated last month
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆10Jun 9, 2025Updated last year
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Nov 22, 2019Updated 6 years ago
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated 2 years ago
- ☆12Jun 22, 2026Updated 4 months ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆24Sep 27, 2026Updated last month
- nf-core/taxprofiler post-processing; verification of classification results; consensus maps☆11Oct 22, 2026Updated last week
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆54Aug 21, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- AlfaPang builds pangenome graphs without alignments or references.☆17Oct 16, 2026Updated 2 weeks ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- Homology-based ANI estimation at unprecedented scales🦀☆25Oct 4, 2026Updated 3 weeks ago
- Guess till correct: Gungnir codec enabling high error-tolerance and low-redundancy DNA storage through substantial computing power☆13Mar 2, 2026Updated 7 months ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 11 months ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated 2 years ago
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- Rust crate to deal with phylogenetic trees☆14Sep 4, 2026Updated last month
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- NCBI Taxonomy History Browser☆10May 7, 2026Updated 5 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆71Apr 10, 2025Updated last year
- k-mer-based non-Bayesian Taxonomic Classifier☆21May 28, 2026Updated 5 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Updated this week
- THRESHER is a framework that replaces fixed cutoffs with data-driven phylothresholds - the SNP thresholds corrected for phylogenetic topo…☆14Oct 17, 2026Updated last week
- Detecting multi-genome synteny using minimizer graph mapping☆117Sep 28, 2026Updated last month
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Sep 9, 2026Updated last month
- ☆32Sep 21, 2023Updated 3 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆59Mar 13, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Benchmark and toy datasets☆12Jan 8, 2025Updated last year
- alignment-free coverage calculation for metagenomic binning >100 times faster☆58May 8, 2026Updated 5 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- µbinfie blog☆19Jul 21, 2025Updated last year
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated 5 months ago
- ☆21Feb 15, 2025Updated last year
- Needleman-Wunsch Alignment in Go☆12Nov 9, 2020Updated 5 years ago