drboothtj / getphylo
a python package for automated generation of phylogenetic trees from genbank files
☆21Updated last month
Alternatives and similar repositories for getphylo:
Users that are interested in getphylo are comparing it to the libraries listed below
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 weeks ago
- Bacterial GWAS analysis☆40Updated 2 weeks ago
- A workflow and scripts for large-scale antiSMASH analyses☆39Updated last month
- Improved Inference of Ortholog Groups using Hidden Markov Models☆33Updated 2 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆30Updated this week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated last week
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆40Updated 4 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last year
- alignment-free coverage calculation for metagenomic binning >100 times faster☆43Updated last month
- Unified Human Gut Virome Catalog☆31Updated 9 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆62Updated 3 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated this week
- EzAAI - High Throughput Prokaryotic AAI Calculator☆40Updated 6 months ago
- UFCG: Universal Fungal Core Genes☆32Updated 3 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated last week
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Python tool to reduce size and redundancy of phylogenetic datasets☆36Updated last year
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆55Updated 3 weeks ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated 9 months ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 6 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 9 months ago
- ☆70Updated this week
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆35Updated last year
- IslandPath standalone software☆32Updated last year
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated 6 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- Eukaryotic genome annotation software.☆18Updated this week
- Gene tree - species tree reconciliation from gene tree distributions☆27Updated 6 months ago