drboothtj / getphylo
a python package for automated generation of phylogenetic trees from genbank files
☆20Updated 2 weeks ago
Alternatives and similar repositories for getphylo:
Users that are interested in getphylo are comparing it to the libraries listed below
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 6 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆32Updated last month
- Bacterial GWAS analysis☆36Updated 2 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆53Updated last week
- Python tool to reduce size and redundancy of phylogenetic datasets☆31Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆34Updated 2 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆60Updated last month
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆32Updated 3 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆43Updated this week
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆22Updated 10 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated 3 weeks ago
- A toolkit for prokaryotic comparative genomics☆41Updated 3 weeks ago
- Tiberius is a deep learning gene finder.☆48Updated this week
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆44Updated 3 weeks ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆37Updated 3 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆53Updated this week
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 4 months ago
- IslandPath standalone software☆31Updated last year
- ☆38Updated 2 months ago
- Prophage Activity Estimator☆26Updated 8 months ago
- ☆62Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- alignment-free coverage calculation for metagenomic binning >100 times faster☆39Updated 3 months ago
- Unified Human Gut Virome Catalog☆27Updated 7 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆39Updated last month
- Pipeline for major biological analyses.☆34Updated 2 years ago
- ☆45Updated last year
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year