drboothtj / getphylo
a python package for automated generation of phylogenetic trees from genbank files
☆16Updated 2 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for getphylo
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆30Updated 2 weeks ago
- ☆35Updated 2 weeks ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆51Updated 6 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆50Updated last week
- deep learning gene finder☆36Updated this week
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆35Updated 2 years ago
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆44Updated 5 months ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆27Updated last year
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆38Updated 2 years ago
- IslandPath standalone software☆31Updated last year
- PLSDB pipeline to collect bacterial plasmids from NCBI☆36Updated last month
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆25Updated last week
- ☆57Updated this week
- alignment-free coverage calculation for metagenomic binning >100 times faster☆38Updated this week
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆39Updated 3 months ago
- Pipeline for major biological analyses.☆34Updated 2 years ago
- Pangenome analysis of eukaryotes.☆18Updated 4 years ago
- Bacterial GWAS analysis☆32Updated last month
- Microbial agile accurate SNP Typer☆29Updated 10 months ago
- Prophage Activity Estimator☆26Updated 5 months ago
- Colinear block visualisation tool☆30Updated 10 months ago
- ☆43Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- Bioinformatic Tools for study Evolution of metabolic diversity☆30Updated 8 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆85Updated this week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆40Updated 3 weeks ago