drboothtj / getphyloLinks
a python package for automated generation of phylogenetic trees from genbank files
☆22Updated 5 months ago
Alternatives and similar repositories for getphylo
Users that are interested in getphylo are comparing it to the libraries listed below
Sorting:
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆38Updated 4 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 4 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆46Updated 8 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆73Updated 2 months ago
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- Bacterial GWAS analysis☆43Updated last month
- Python tool to reduce size and redundancy of phylogenetic datasets☆45Updated 2 years ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆27Updated 4 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated 2 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆73Updated 2 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 5 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆49Updated last month
- alignment-free coverage calculation for metagenomic binning >100 times faster☆47Updated 5 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆88Updated 3 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated 3 weeks ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 2 years ago
- UFCG: Universal Fungal Core Genes☆34Updated last month
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Updated 3 years ago
- ☆75Updated this week
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆47Updated 3 weeks ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆25Updated last month
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 weeks ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 4 months ago
- IQ-TREE version 3: software for phylogenetics☆68Updated last week
- Classify metagenomic contigs as eukaryotic or prokaryotic☆39Updated 2 years ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆16Updated 2 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Evaluating Nanopore-based bacterial variant calling☆19Updated last month
- ☆32Updated 6 months ago