bioinf-benchmarking / mapping-benchmarkingLinks
Snakemake pipeline for benchmarking read mappers
☆16Updated last year
Alternatives and similar repositories for mapping-benchmarking
Users that are interested in mapping-benchmarking are comparing it to the libraries listed below
Sorting:
- Tumour-only somatic mutation calling using long reads☆27Updated 7 months ago
- Immuological gene typing and annotation for genome assembly☆37Updated 3 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Location of public benchmarking; primarily final results☆18Updated 4 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- ☆31Updated 2 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 6 months ago
- ☆22Updated last month
- SV genotyping with long reads☆39Updated last year
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆27Updated 6 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 3 months ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated 2 weeks ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆38Updated 3 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- a lexicographically-based GTF/GFF sorter☆35Updated last month
- A long-read analysis toolbox for cancer and population genomics☆23Updated 4 months ago
- Convert HAL to VG☆22Updated 10 months ago
- Haplotype phaser for next-generation sequencing data☆13Updated 3 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- ☆16Updated 5 months ago
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 7 months ago