bioinf-benchmarking / mapping-benchmarkingLinks
Snakemake pipeline for benchmarking read mappers
☆16Updated last year
Alternatives and similar repositories for mapping-benchmarking
Users that are interested in mapping-benchmarking are comparing it to the libraries listed below
Sorting:
- Tumour-only somatic mutation calling using long reads☆27Updated 8 months ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 4 months ago
- ☆31Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated 2 months ago
- ☆23Updated last month
- Location of public benchmarking; primarily final results☆18Updated 5 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆43Updated last year
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- Immuological gene typing and annotation for genome assembly☆37Updated 4 months ago
- ☆16Updated 6 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 7 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Pan-Genomic Matching Statistics☆52Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Optimized sequence graph implementations for graph genomics☆34Updated this week
- Structural variant (SV) analysis tools☆36Updated last year
- REINDEER REad Index for abuNDancE quERy☆58Updated last week
- A tutorial on structural variant calling for short read sequencing data☆39Updated 8 months ago
- Population-wide Deletion Calling☆35Updated 3 months ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- ☆49Updated 8 months ago
- ☆19Updated 3 months ago
- Sample Contamination Estimate from VCF☆19Updated 8 months ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆54Updated 2 weeks ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago