bioinf-benchmarking / mapping-benchmarking
Snakemake pipeline for benchmarking read mappers
☆16Updated last year
Alternatives and similar repositories for mapping-benchmarking:
Users that are interested in mapping-benchmarking are comparing it to the libraries listed below
- Tumour-only somatic mutation calling using long reads☆25Updated 2 months ago
- Location of public benchmarking; primarily final results☆18Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆32Updated this week
- Immuological gene typing and annotation for genome assembly☆31Updated 2 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆24Updated 3 weeks ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 2 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated 3 months ago
- ☆20Updated last month
- ☆16Updated this week
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 7 months ago
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆36Updated this week
- Population-wide Deletion Calling☆35Updated 4 months ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆42Updated 3 months ago
- Pan-Genomic Matching Statistics☆48Updated 9 months ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆18Updated last week
- ☆29Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- Creating alignment plots from bam files☆56Updated this week
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- ☆64Updated 9 months ago
- ☆14Updated this week
- Structural variant (SV) analysis tools☆35Updated 6 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆35Updated last week
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- A long-read analysis toolbox for cancer and population genomics☆21Updated 10 months ago
- ☆34Updated 4 years ago