Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
☆21Oct 20, 2023Updated 2 years ago
Alternatives and similar repositories for kmer2sequences
Users that are interested in kmer2sequences are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated 2 years ago
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated last year
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 2 years ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 4 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆32Sep 21, 2023Updated 2 years ago
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 9 months ago
- Index kmtricks bf matrices☆49Apr 29, 2026Updated last month
- ☆62Sep 15, 2025Updated 8 months ago
- Compacted and colored de Bruijn graph construction and querying☆97Updated this week
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40May 4, 2026Updated last month
- ☆21Feb 15, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Paired reads mapping on de Bruijn graph☆13Jan 15, 2019Updated 7 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- A pairwise sequence aligner written in Rust☆153May 22, 2026Updated 3 weeks ago
- ☆11Dec 22, 2022Updated 3 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆44Sep 29, 2025Updated 8 months ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Bacterial Operon Finder for Functional Organization☆15Nov 14, 2023Updated 2 years ago
- Lab notebook for people who like the command line.☆11Mar 6, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- Implementation of a Backpack Quotient Filter☆13May 6, 2026Updated last month
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- Bifrost graph gene caller.☆98Apr 12, 2026Updated 2 months ago
- ☆31Mar 27, 2024Updated 2 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆133Updated this week
- Space-efficient pseudoalignment with a colored de Bruijn graph☆55Mar 13, 2025Updated last year
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 3 months ago
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Strain-level haplotyping for metagenomes with short or long-reads.☆67Apr 10, 2025Updated last year
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆34Jul 2, 2024Updated last year
- Rust bindings to minimap2 library☆112May 3, 2026Updated last month
- modular k-mer count matrix and Bloom filter construction for large read collections☆88Mar 24, 2026Updated 2 months ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- A data manipulation tool for parquet, csv, and json data.☆44Mar 7, 2025Updated last year