Alternatives and similar repositories for kmer2sequences

Users that are interested in kmer2sequences are comparing it to the libraries listed below

• iqbal-lab-org / minos
  Variant call adjudication
  ☆16Updated 11 months ago
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆24Updated 6 months ago
• iqbal-lab-org / varifier
  Variant call verification
  ☆16Updated 3 weeks ago
• bede / seqsum
  Robust individual and aggregate checksums for nucleotide sequences
  ☆16Updated last year
• richarddurbin / syng
  syncmer graphs, and perhaps other sorts of sequence graphs
  ☆20Updated 2 months ago
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆13Updated 3 weeks ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 7 months ago
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• Gaius-Augustus / clamsa
  ClaMSA (Classify Multiple Sequence Alignments).
  ☆13Updated 6 months ago
• sourmash-bio / sourmash_plugin_branchwater
  fast, multithreaded sourmash operations: search, compare, and gather.
  ☆22Updated this week
• IndexThePlanet / LoganSearch
  A k-mer search engine for all Sequence Read Archive public accessions
  ☆29Updated 7 months ago
• refresh-bio / clusty
  ☆11Updated 2 weeks ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 6 months ago
• HaploConduct / HaploConduct
  Haplotype-aware genome assembly toolkit
  ☆29Updated 5 years ago
• pg-space / panspace
  Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes
  ☆10Updated last month
• JMencius / LongBow
  Basecalling configuration prediction through FASTQ files
  ☆19Updated 2 weeks ago
• iqbal-lab-org / simutator
  Simulate mutations in genomes
  ☆15Updated 4 years ago
• pierrepeterlongo / back_to_sequences
  ☆42Updated 3 months ago
• lh3 / gffio
  ☆32Updated 2 years ago
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆35Updated 4 months ago
• althonos / pyskani
  PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
  ☆27Updated 3 weeks ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated 2 months ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆32Updated last month
• CuiMiao-HIT / miniSNV
  ☆18Updated 6 months ago
• lrobidou / KFC
  ☆18Updated 3 months ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆22Updated 4 years ago
• Magdoll / CoSA
  Coronavirus (SARS-Cov-2) sequencing analysis
  ☆10Updated 3 years ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆36Updated last year
• mbhall88 / psdm
  Compute a pairwise SNP distance matrix from one or two alignment(s)
  ☆25Updated 8 months ago
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆21Updated 4 months ago