tree visualization for tree + annotation data
β62Jun 17, 2025Updated last year
Alternatives and similar repositories for TreeProfiler
Users that are interested in TreeProfiler are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- π¦ π§¬π§βπ»π Microbial genomes-to-report pipelineβ75Mar 14, 2026Updated 4 months ago
- A machine learning approach to alignment filteringβ16Jun 18, 2026Updated last month
- Phyling: phylogenetic inference from annotated genomesβ33Updated this week
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.β33Nov 2, 2025Updated 8 months ago
- Sketch phylogenetic trees and networksβ26Updated this week
- End-to-end encrypted email - Proton Mail β’ AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.β61May 24, 2026Updated last month
- blastn2dotplots: multiple dot-plot visualizerβ28Sep 15, 2025Updated 10 months ago
- β12Jun 12, 2023Updated 3 years ago
- Discovery of conserved gene clusters in multiple genomesβ135Jan 16, 2026Updated 6 months ago
- π𧬠GraphBin-Tk: assembly graph-based metagenomic binning toolkitβ24Jun 25, 2026Updated 3 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)β72Updated this week
- Quartet-based species tree and tree of blob estimationβ16Jul 3, 2026Updated 2 weeks ago
- Computation of average nucleotide identity with the use of MMseqs2β24Dec 11, 2024Updated last year
- Bacterial GWAS analysisβ57Jun 12, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)β60Jul 5, 2026Updated 2 weeks ago
- Bioinformatics tool for Locus Visualisationβ168Mar 30, 2026Updated 3 months ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignmentsβ109Dec 11, 2023Updated 2 years ago
- Annotate Olfactory receptor CDS from genomeβ11Apr 29, 2023Updated 3 years ago
- Workflow for MAG quality assessment and taxonomical annotation.β15May 26, 2026Updated last month
- β26Jan 26, 2026Updated 5 months ago
- Woltka: a versatile meta'omic data classifierβ80Sep 8, 2025Updated 10 months ago
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencingβ20May 11, 2022Updated 4 years ago
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseβ¦β106Updated this week
- Simple, predictable pricing with DigitalOcean hosting β’ AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogeniesβ88Updated this week
- β11Jul 4, 2022Updated 4 years ago
- Download assembly files from NCBIβ13May 9, 2023Updated 3 years ago
- Manipulate and generate figures for trees in Newick formatβ22Jul 31, 2025Updated 11 months ago
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment filesβ42Jul 1, 2026Updated 2 weeks ago
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)β254Jun 25, 2026Updated 3 weeks ago
- A genome completeness evaluation tool based on miniprotβ254Updated this week
- Scatterbar - data visualization for proportional data across many spatially resolved coordinatesβ12Mar 3, 2025Updated last year
- Metagenomic Binning Algorithmβ54Jan 16, 2026Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptopβ75Apr 1, 2026Updated 3 months ago
- Analyzer of Gene and Species Treesβ11Aug 8, 2016Updated 9 years ago
- Gene tree - species tree reconciliation from gene tree distributionsβ43Apr 30, 2026Updated 2 months ago
- Genome size estimation from long read overlapsβ92Jun 22, 2026Updated last month
- A rapid and low-memory multiple-genome aligner for closely related genomesβ26Sep 3, 2025Updated 10 months ago
- A software for gap filling in genome assembliesβ10Aug 12, 2022Updated 3 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.β314Feb 3, 2026Updated 5 months ago