compgenomicslab / TreeProfiler
tree visualization for tree + annotation data
☆32Updated this week
Alternatives and similar repositories for TreeProfiler:
Users that are interested in TreeProfiler are comparing it to the libraries listed below
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Recombination-free trees☆58Updated 3 weeks ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆47Updated 2 months ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆18Updated last year
- Bacterial GWAS analysis☆40Updated this week
- Eukaryotic genome annotation software.☆17Updated this week
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- orthology assignment using phylogenetic and network analyses☆46Updated last month
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆36Updated 2 months ago
- Split Kmer Analysis☆63Updated 2 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆44Updated 4 months ago
- A toolkit for prokaryotic comparative genomics☆47Updated 3 months ago
- Gene-flank analysis tool☆27Updated 4 months ago
- Scalable creating/updating of metagenome profiling databases☆60Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆50Updated 2 weeks ago
- reference-based long read assemblies of bacterial genomes☆48Updated 3 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆21Updated last month
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Split k-mer analysis – version 2☆82Updated 2 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- Pangenome analysis of eukaryotes.☆18Updated 4 years ago
- Remove human reads from a sequencing run☆40Updated 6 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago