Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
☆54May 16, 2023Updated 3 years ago
Alternatives and similar repositories for ideel
Users that are interested in ideel are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆16Jun 26, 2018Updated 8 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Visualization tool for (meta)genome assembly graphs☆50Updated this week
- Reorients assembled microbial sequences☆146Jun 30, 2026Updated 2 months ago
- Parallel/Homoplasic SNP Finder☆20May 3, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- ☆14Mar 28, 2018Updated 8 years ago
- ☆19Nov 8, 2022Updated 3 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆681Aug 7, 2026Updated last month
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 7 years ago
- Find Unique genomic Regions☆34Sep 8, 2026Updated 2 weeks ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆36Aug 11, 2026Updated last month
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆44Dec 11, 2020Updated 5 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 6 months ago
- Genome size estimation from long read overlaps☆97Sep 8, 2026Updated 2 weeks ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 2 months ago
- High-quality Nanopore-only genome polisher☆71Aug 16, 2024Updated 2 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆30Jul 18, 2025Updated last year
- Graph-based assembly phasing☆102Nov 25, 2025Updated 9 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆102Jul 8, 2022Updated 4 years ago
- ☆16May 1, 2025Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆348Jul 24, 2026Updated 2 months ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆10Mar 10, 2026Updated 6 months ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆19Apr 4, 2023Updated 3 years ago
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Sep 14, 2026Updated last week
- Order and orientation of complete bacterial genomes☆29Jun 30, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…