mw55309 / ideelLinks
Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
☆54Updated 2 years ago
Alternatives and similar repositories for ideel
Users that are interested in ideel are comparing it to the libraries listed below
Sorting:
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- A tool for removing redundant genomes from a set of assemblies☆76Updated last week
- Split Kmer Analysis☆65Updated 3 years ago
- Recombination-free trees☆60Updated 2 weeks ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Split k-mer analysis – version 2☆92Updated last month
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆61Updated 3 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 6 months ago
- Bifrost graph gene caller.☆95Updated 11 months ago
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- Graph-based assembly phasing☆87Updated 4 months ago
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago
- ☆83Updated 2 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- ☆37Updated 3 years ago
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆59Updated 4 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆58Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated last year
- Gene-flank analysis tool☆30Updated 8 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- Order and orientation of complete bacterial genomes☆28Updated 2 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago
- Automated strain separation of low-complexity metagenomes☆50Updated 3 years ago
- IS mapping software☆56Updated 3 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆51Updated 9 months ago