wdecoster / STRdustLinks
Tandem repeat genotyping from long reads
☆14Updated 2 months ago
Alternatives and similar repositories for STRdust
Users that are interested in STRdust are comparing it to the libraries listed below
Sorting:
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated last month
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18Updated last year
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Tandem repeat genotyping with long reads☆28Updated 2 weeks ago
- ☆13Updated 3 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 6 months ago
- Kmer Analysis of Pileups for Genotyping☆29Updated last month
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 3 weeks ago
- Tumour-only somatic mutation calling using long reads☆26Updated 7 months ago
- ☆48Updated 11 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated 10 months ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 4 years ago
- Population-wide Deletion Calling☆35Updated last month
- Short Tandem Repeat disease loci resource☆18Updated this week
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆18Updated last year
- Working space for the GIAB TR benchmarking project☆21Updated 7 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆28Updated last year
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- ☆30Updated 2 years ago
- ☆80Updated 3 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 11 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 6 months ago
- Location of public benchmarking; primarily final results☆18Updated 3 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆40Updated 8 months ago
- Tumor-normal variant calling workflow using HiFi reads☆20Updated last week
- Structural variant caller☆54Updated 3 years ago
- SV calling for diploid assemblies☆27Updated last year