wdecoster / STRdustLinks
Tandem repeat genotyping from long reads
☆16Updated last month
Alternatives and similar repositories for STRdust
Users that are interested in STRdust are comparing it to the libraries listed below
Sorting:
- Kmer Analysis of Pileups for Genotyping☆32Updated last week
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆30Updated 4 months ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- Tandem repeat genotyping with long reads☆30Updated 3 months ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆44Updated this week
- ☆48Updated last year
- ☆81Updated 6 months ago
- ☆21Updated 6 months ago
- Tumour-only somatic mutation calling using long reads☆27Updated 10 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 9 months ago
- SV genotyping with long reads☆39Updated 2 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆30Updated 3 weeks ago
- Tumor-normal variant calling workflow using HiFi reads☆20Updated 3 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆50Updated 5 months ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆19Updated 2 weeks ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- Structural variant (SV) analysis tools☆36Updated last year
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 8 months ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Updated last year
- Structural variant benchmark☆18Updated 6 months ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 6 months ago
- Variant annotation and merging pipeline☆39Updated last month
- Structural variant caller☆55Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Working space for the GIAB TR benchmarking project☆21Updated 10 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated last year