wdecoster / STRdustLinks
Tandem repeat genotyping from long reads
☆18Updated last week
Alternatives and similar repositories for STRdust
Users that are interested in STRdust are comparing it to the libraries listed below
Sorting:
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 3 months ago
- Kmer Analysis of Pileups for Genotyping☆34Updated this week
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 7 months ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆51Updated 9 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆34Updated 2 years ago
- Working space for the GIAB TR benchmarking project☆23Updated last year
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Updated last week
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Updated 2 years ago
- Tumor-normal variant calling workflow using HiFi reads☆24Updated this week
- Joint structural variant and copy number variant caller for HiFi sequencing data☆65Updated last month
- ☆49Updated last year
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 3 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆25Updated 7 months ago
- Tandem repeat genotyping with long reads☆33Updated 2 months ago
- Population-wide Deletion Calling☆35Updated 7 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated last year
- Immuological gene typing and annotation for genome assembly☆38Updated 8 months ago
- Structural variant caller☆55Updated 4 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated last month
- ☆44Updated last year
- Easy genomic regions for short-read variant calling☆45Updated 3 months ago
- Structural variant (SV) analysis tools☆39Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 9 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- ☆26Updated 3 months ago
- ☆83Updated 9 months ago
- A variant caller for the GBA gene using WGS data☆23Updated last year