Alternatives and similar repositories for phylosketch2

Users that are interested in phylosketch2 are comparing it to the libraries listed below

• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆30Updated 2 years ago
• at-cg / RAFT
  ☆25Updated 10 months ago
• institut-de-genomique / HAPO-G
  Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.
  ☆25Updated last year
• davidebolo1993 / cosigt
  ☆20Updated last week
• mahulchak / mscaffolder
  A comparative genome scaffolding tool
  ☆17Updated 6 years ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated last month
• marbl / training
  Genome Assembly 102
  ☆14Updated 2 months ago
• AntoineHo / HapPy
  Haploidy and Size Completeness Estimation
  ☆13Updated last year
• TravisWheelerLab / BATH
  Better Alignments with Translated HMMER
  ☆21Updated last week
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆20Updated 3 months ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• mcsimenc / PhyLTR
  Phylogenetic Analysis of Long Terminal Repeat Retrotransposons
  ☆17Updated 2 years ago
• kammoji / gapFinisher
  A reliable gap filling pipeline for draft genomes
  ☆11Updated 5 years ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 7 months ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆23Updated 3 years ago
• SamiLhll / macrosyntR
  R package for comparison of synteny conservation at the genome-wide scale.
  ☆14Updated last year
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated 9 months ago
• GTPB / CPANG22
  Computational Pangenomics
  ☆17Updated 3 years ago
• alguoo314 / JASPER
  This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)
  ☆12Updated last year
• JLSteenwyk / orthosnap
  a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
  ☆26Updated 4 months ago
• iganna / pannagram
  ☆19Updated last week
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆27Updated 3 years ago
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆38Updated 8 months ago
• h836472 / ContScout
  ContScout sequence contamination filter tool
  ☆20Updated last month
• MoinSebi / gfa2bin
  ☆24Updated 6 months ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆24Updated this week
• mkirsche / Grafter
  Scaffolding with Ultralong Reads
  ☆15Updated 4 years ago
• qiyunzhu / BeforePhylo
  Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction
  ☆11Updated 10 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆20Updated 8 months ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆26Updated 3 months ago