husonlab / phylosketch2Links
Sketch phylogenetic trees and networks
☆20Updated last week
Alternatives and similar repositories for phylosketch2
Users that are interested in phylosketch2 are comparing it to the libraries listed below
Sorting:
- ☆26Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 2 months ago
- Better Alignments with Translated HMMER☆21Updated this week
- ☆20Updated last week
- Differential k-mer analysis☆36Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 5 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated 9 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Genome size estimation from long read overlaps☆59Updated last week
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Genome Assembly 102☆15Updated 4 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Segmental duplication detection tool☆16Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆43Updated 10 months ago
- ☆25Updated 3 weeks ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 9 months ago
- recompute GFA link overlaps☆26Updated 2 years ago
- transposable element typing pipeline☆19Updated last year
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Updated 2 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 6 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆18Updated 3 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 6 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆39Updated 10 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago