Rust implementation of the Haskell Rampart library that determines how intervals relate to each other.
☆11Apr 21, 2022Updated 3 years ago
Alternatives and similar repositories for rust-rampart
Users that are interested in rust-rampart are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 9 months ago
- ☆21Dec 26, 2025Updated 3 months ago
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year
- PCA in rust☆16Jul 30, 2023Updated 2 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 2 months ago
- ☆18Dec 26, 2025Updated 3 months ago
- ☆16Jan 6, 2023Updated 3 years ago
- HyperTwoBits implementation☆17Aug 29, 2025Updated 7 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- Parallelized zip archive reading☆37Dec 24, 2024Updated last year
- Collection of succinct data structures in Rust☆104Mar 4, 2026Updated 3 weeks ago
- a lexicographically-based GTF/GFF sorter☆38Mar 16, 2026Updated last week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- Fast non-cryptographic hash, with the benchmarks to prove it.☆20Jun 19, 2023Updated 2 years ago
- bgzip support for Rust☆18Nov 16, 2023Updated 2 years ago
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 5 months ago
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated 11 months ago
- Benchmarking pairwise aligners☆37Feb 8, 2025Updated last year
- A high-performance BigWig and BigBed library in Rust☆113Feb 13, 2026Updated last month
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Small general purpose library for C and Python with focus on bioinformatics.☆31Sep 15, 2022Updated 3 years ago
- JTK -- a regional diploid genome assembler☆26Oct 20, 2024Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆39Apr 28, 2025Updated 11 months ago
- Rust bindings to parasail, a SIMD-accelerated pairwise sequence alignment library.☆21Jul 25, 2016Updated 9 years ago
- Rust spy functions for testing purposes☆11Aug 24, 2019Updated 6 years ago
- Simple and transparent support for compressed files.☆81Feb 27, 2026Updated last month
- A Rust library and command line tool for working with genomic ranges and their data.☆100May 29, 2024Updated last year
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆27Mar 22, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆37Jan 21, 2026Updated 2 months ago
- Implicit Interval Tree with Interpolation Index☆42Jul 13, 2022Updated 3 years ago
- Single-cell analysis methods in Rust☆30Nov 4, 2025Updated 4 months ago
- Succinct data structures using very efficient rank and select☆131Feb 18, 2026Updated last month
- an API for intersections of genomic data☆147Mar 12, 2026Updated 2 weeks ago
- Multi backend HashMap for higher performance on different key space sizes☆30Oct 5, 2025Updated 5 months ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 2 months ago