gtnao / rust-rampartLinks
Rust implementation of the Haskell Rampart library that determines how intervals relate to each other.
☆12Updated 3 years ago
Alternatives and similar repositories for rust-rampart
Users that are interested in rust-rampart are comparing it to the libraries listed below
Sorting:
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 2 months ago
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆21Updated 2 years ago
- String algorithm visualizations☆13Updated 2 years ago
- ☆22Updated 3 years ago
- Shared k-mer content between two genomes☆18Updated 2 years ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- ☆14Updated last year
- bgzip support for Rust☆16Updated last year
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆31Updated last year
- ☆22Updated 8 months ago
- Rust library for processing sequencing reads.☆25Updated 11 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated 2 years ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆12Updated 6 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 10 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Updated 8 months ago
- Command line tools for IntSpan related bioinformatics operations☆13Updated 4 months ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆15Updated 2 years ago
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Updated 9 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- your friendly pangenome graph genotyper☆10Updated 2 years ago
- Minimum plain text representation of kmer sets☆17Updated 6 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated last year
- Fast sequence distance estimates☆14Updated this week
- Singular Genomics Demultiplexing Tool☆16Updated last year
- Alignment-based gene expression quantification☆29Updated 4 months ago
- ☆11Updated 3 years ago
- Benchmarking pairwise aligners☆36Updated 6 months ago
- ntHash implementation in Rust☆36Updated last year
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆13Updated 8 months ago