Alternatives and similar repositories for brainglobe-registration

Users that are interested in brainglobe-registration are comparing it to the libraries listed below

• bkntr / brainways
  Brainways
  ☆18Updated last month
• brainglobe / brainrender-napari
  A napari plugin to render BrainGlobe atlases and associated data as layers.
  ☆22Updated this week
• NicoKiaru / ABBA-Python
  How to use Aligning Big Brains and Atlases with Python
  ☆15Updated 2 years ago
• brainglobe / napari-brainreg
  Visualise brainreg registration output
  ☆10Updated 3 years ago
• brainglobe / cellfinder-napari
  Efficient cell detection in large images using cellfinder in napari
  ☆22Updated last year
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆33Updated this week
• brainglobe / cellfinder-core
  Standalone cellfinder cell detection algorithm
  ☆19Updated last year
• brainglobe / imio
  Loading and saving of image data.
  ☆10Updated last year
• brainglobe / brainglobe-space
  Anatomical space conventions made easy.
  ☆10Updated last week
• Gubra-ApS / LSFM-mouse-brain-atlas
  ☆18Updated 3 years ago
• brainglobe / brainglobe-template-builder
  Build unbiased anatomical templates from individual images
  ☆11Updated last week
• BIOP / abba_python
  ABBA, controlled from python
  ☆13Updated 4 months ago
• danionella / warpfield
  GPU-based 3D non-rigid volumetric registration
  ☆39Updated last month
• AllenCell / napari-allencell-segmenter
  A plugin that enables image segmentation provided by Allen Institute for Cell Science
  ☆16Updated last year
• AdaptiveMotorControlLab / CellSeg3D
  A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
  ☆97Updated last week
• nickdelgrosso / ABBA-QuPath-RegistrationAnalysis
  A visualization app for 3D-registered data processed in ABBA and QuPath
  ☆17Updated 2 years ago
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆50Updated 2 weeks ago
• brainglobe / brainreg-napari
  Automated 3D brain registration in napari with support for multiple species and atlases.
  ☆16Updated last year
• dterstege / FASTMAP
  ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing
  ☆21Updated 3 years ago
• brainglobe / bg-brainrender-gui
  A GUI built on brainrender: visualise brain regions, neurons and labelled cells.
  ☆12Updated 4 years ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• haesleinhuepf / napari-simpleitk-image-processing
  Process images using SimpleITK in napari
  ☆21Updated 2 months ago
• chanzuckerberg / napari-plugin-alfa-cohort
  Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration
  ☆11Updated 4 years ago
• ariel-waisman / LabelsToROIs
  A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
  ☆23Updated 3 years ago
• neurodata / CloudReg
  CloudReg
  ☆11Updated last year
• PrincetonUniversity / BrainPipe
  ☆18Updated 3 years ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆85Updated 3 weeks ago
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆43Updated last week
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆36Updated last year
• mobie / mobie
  MultiModal Big Image Data Sharing and Exploration
  ☆16Updated 2 years ago