brainglobe / brainglobe-registrationLinks
Registration to BrainGlobe atlases in napari using Elastix
☆23Updated 3 weeks ago
Alternatives and similar repositories for brainglobe-registration
Users that are interested in brainglobe-registration are comparing it to the libraries listed below
Sorting:
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated 3 weeks ago
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- Segmentation of anatomical structures in a common coordinate space☆33Updated this week
- Standalone cellfinder cell detection algorithm☆20Updated last year
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated 3 weeks ago
- Loading and saving of image data.☆10Updated last year
- How to use Aligning Big Brains and Atlases with Python☆14Updated 2 years ago
- Brainways☆21Updated 2 months ago
- Anatomical space conventions made easy.☆10Updated 3 weeks ago
- Visualise brainreg registration output☆10Updated 3 years ago
- ABBA, controlled from python☆15Updated this week
- ☆18Updated 3 years ago
- UNRAVEL: UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet images☆13Updated this week
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆53Updated last week
- GPU-based 3D non-rigid volumetric registration☆41Updated 2 months ago
- Build unbiased anatomical templates from individual images☆12Updated last week
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Updated last year
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated last year
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆105Updated 3 weeks ago
- ☆18Updated 3 years ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 4 years ago
- Tools for distributed alignment of massive images☆87Updated last month
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆23Updated 3 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- CloudReg☆11Updated last year
- ☆45Updated 5 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆44Updated 3 weeks ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆17Updated 2 weeks ago