brainglobe / brainglobe-registrationLinks
Registration to BrainGlobe atlases in napari using Elastix
☆22Updated this week
Alternatives and similar repositories for brainglobe-registration
Users that are interested in brainglobe-registration are comparing it to the libraries listed below
Sorting:
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated last week
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated this week
- Brainways☆19Updated 2 months ago
- Visualise brainreg registration output☆10Updated 3 years ago
- Loading and saving of image data.☆10Updated last year
- Standalone cellfinder cell detection algorithm☆19Updated last year
- Anatomical space conventions made easy.☆10Updated this week
- Segmentation of anatomical structures in a common coordinate space☆33Updated last week
- How to use Aligning Big Brains and Atlases with Python☆15Updated 2 years ago
- ☆18Updated 3 years ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Updated last year
- Build unbiased anatomical templates from individual images☆11Updated this week
- ABBA, controlled from python☆15Updated 4 months ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆52Updated last week
- General information, resources and dicussions for the BrainGlobe project.☆11Updated 5 months ago
- GPU-based 3D non-rigid volumetric registration☆39Updated 2 months ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 4 years ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆23Updated 3 years ago
- ☆18Updated 3 years ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆17Updated 2 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆44Updated this week
- ☆34Updated 2 months ago
- Fancier logging with python.☆13Updated this week
- ☆45Updated 5 years ago
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆100Updated last month
- ☆10Updated 2 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated 9 months ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year