Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
☆94Mar 26, 2026Updated last month
Alternatives and similar repositories for HumanPilot
Users that are interested in HumanPilot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for the spatialLIBD R/Bioconductor package and shiny app☆112Mar 27, 2026Updated last month
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆260Feb 9, 2026Updated 2 months ago
- Identify spatial domain☆90May 29, 2025Updated 11 months ago
- ☆13Feb 15, 2024Updated 2 years ago
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆25Dec 19, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- ☆11Sep 7, 2023Updated 2 years ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆176Jan 8, 2026Updated 3 months ago
- The benchmarking of spatial transcriptomics deconvolution methods☆34Feb 24, 2023Updated 3 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆68Nov 10, 2023Updated 2 years ago
- code and dataset for spatialDWLS☆14Apr 18, 2021Updated 5 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆93Feb 11, 2026Updated 2 months ago
- Spatial mapping of cell types by integration of transcriptomics data☆100Apr 25, 2026Updated last week
- overview of spatial datasets☆79Feb 19, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆131Jun 10, 2022Updated 3 years ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆40Aug 11, 2022Updated 3 years ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆44Feb 19, 2026Updated 2 months ago
- Pipeline for SpatialTranscriptomics and 10X Visium data☆22Jul 22, 2025Updated 9 months ago
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆25Mar 26, 2026Updated last month
- Image processing pipeline for spatial projects☆17Aug 3, 2023Updated 2 years ago
- ☆14Jan 24, 2024Updated 2 years ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Jun 11, 2021Updated 4 years ago
- ☆13Sep 30, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Cell clustering for spatial transcriptomics data with graph neural network☆64Mar 31, 2023Updated 3 years ago
- spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples☆31Mar 26, 2026Updated last month
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆11Mar 4, 2025Updated last year
- Spatial alignment of single cell transcriptomic data.☆361Jul 1, 2025Updated 10 months ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆13Oct 31, 2023Updated 2 years ago
- Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data☆19Aug 7, 2024Updated last year
- ☆41Dec 4, 2023Updated 2 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆449Jan 22, 2026Updated 3 months ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆41Jul 1, 2024Updated last year
- A novel machine learning pipeline to analyse spatial transcriptomics data☆245Apr 17, 2026Updated 2 weeks ago
- Test genes for Spatial Variation☆185May 7, 2024Updated last year
- ☆22Oct 30, 2022Updated 3 years ago
- ☆11Jun 25, 2024Updated last year
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆71Nov 20, 2023Updated 2 years ago
- Her2 Breast Cancer Project☆98Nov 27, 2022Updated 3 years ago