LieberInstitute / HumanPilot
Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
☆67Updated 3 months ago
Related projects: ⓘ
- Code for the spatialLIBD R/Bioconductor package and shiny app☆80Updated last month
- Spatial-Linked Alignment Tool☆71Updated 3 months ago
- ☆45Updated last month
- overview of spatial datasets☆66Updated 7 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆31Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆28Updated 5 months ago
- The benchmarking of spatial transcriptomics deconvolution methods☆20Updated last year
- ☆39Updated 10 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆49Updated 3 months ago
- ☆86Updated 4 months ago
- ☆107Updated 2 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆77Updated last year
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆95Updated 3 weeks ago
- Super-resolved spatial transcriptomics by deep data fusion☆62Updated last year
- ☆85Updated 6 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆28Updated 2 months ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆34Updated 2 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆52Updated last year
- ☆23Updated 3 months ago
- Cell clustering for spatial transcriptomics data with graph neural network☆55Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆45Updated 10 months ago
- ☆10Updated 2 years ago
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆52Updated 9 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆23Updated 3 months ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆57Updated 3 months ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆41Updated 6 months ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆105Updated 3 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆102Updated 7 months ago
- domain adaptation of spatial and single-cell transcriptome☆22Updated 7 months ago
- Her2 Breast Cancer Project☆53Updated last year