LieberInstitute / HumanPilotLinks
Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
☆83Updated last year
Alternatives and similar repositories for HumanPilot
Users that are interested in HumanPilot are comparing it to the libraries listed below
Sorting:
- Code for the spatialLIBD R/Bioconductor package and shiny app☆96Updated 3 months ago
- overview of spatial datasets☆75Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆90Updated 5 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- ☆122Updated 3 years ago
- ☆59Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆36Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆44Updated last year
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆64Updated 9 months ago
- End-to-end analysis of spatial multi-omics data☆90Updated 2 weeks ago
- ☆55Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆69Updated last year
- ☆52Updated 4 years ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆119Updated 2 months ago
- Bayesian Analytics for Spatial Segmentation☆29Updated 3 months ago
- data for spacejam2☆17Updated 3 years ago
- ☆124Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆86Updated last year
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆33Updated 2 years ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆58Updated last year
- Spatial mapping of cell types by integration of transcriptomics data☆93Updated 3 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆37Updated 5 months ago
- ☆60Updated 9 months ago
- Spatial-Linked Alignment Tool☆87Updated 8 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆129Updated last week
- ☆140Updated 8 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆44Updated 4 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆113Updated last year
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated 2 years ago
- Code used to benchmark Xenium☆65Updated last year