LieberInstitute / HumanPilotLinks
Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
☆83Updated last year
Alternatives and similar repositories for HumanPilot
Users that are interested in HumanPilot are comparing it to the libraries listed below
Sorting:
- Code for the spatialLIBD R/Bioconductor package and shiny app☆96Updated this week
- ☆122Updated 3 years ago
- overview of spatial datasets☆76Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆45Updated last year
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆119Updated 3 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆94Updated 6 months ago
- ☆59Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆88Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆36Updated last year
- Bayesian Analytics for Spatial Segmentation☆29Updated 4 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆130Updated this week
- ☆52Updated 4 years ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆66Updated 10 months ago
- ☆55Updated last year
- End-to-end analysis of spatial multi-omics data☆93Updated last month
- ☆124Updated last year
- Spatial-Linked Alignment Tool☆88Updated 8 months ago
- Spatial mapping of cell types by integration of transcriptomics data☆94Updated 3 years ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆60Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆73Updated last year
- Code used to benchmark Xenium☆66Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆38Updated 6 months ago
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆235Updated last year
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆45Updated 4 years ago
- ☆50Updated 3 months ago
- ☆141Updated 8 months ago
- ☆61Updated 10 months ago
- The benchmarking of spatial transcriptomics deconvolution methods☆32Updated 2 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆33Updated 2 years ago