LieberInstitute / HumanPilot
Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
☆77Updated 8 months ago
Alternatives and similar repositories for HumanPilot:
Users that are interested in HumanPilot are comparing it to the libraries listed below
- Code for the spatialLIBD R/Bioconductor package and shiny app☆90Updated this week
- overview of spatial datasets☆70Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆70Updated last year
- ☆115Updated 2 years ago
- ☆107Updated 9 months ago
- ☆52Updated 6 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆34Updated 10 months ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆108Updated 6 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆59Updated 8 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆71Updated last year
- Spatial-Linked Alignment Tool☆82Updated 2 months ago
- Bayesian Analytics for Spatial Segmentation☆23Updated 4 months ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆122Updated 3 months ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆52Updated 11 months ago
- Code used to benchmark Xenium☆43Updated 7 months ago
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆60Updated last year
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆106Updated this week
- Cell clustering for spatial transcriptomics data with graph neural network☆59Updated last year
- ☆114Updated 2 years ago
- The benchmarking of spatial transcriptomics deconvolution methods☆28Updated last year
- ☆104Updated 11 months ago
- ☆18Updated last month
- Spatial mapping of cell types by integration of transcriptomics data☆89Updated 2 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆121Updated this week
- ☆49Updated 3 months ago
- Reproducing the experiments of the DestVI paper☆17Updated 3 years ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆37Updated 2 years ago
- ☆44Updated 4 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆30Updated 2 weeks ago