ludvb / xfuseLinks
Super-resolved spatial transcriptomics by deep data fusion
☆74Updated 2 years ago
Alternatives and similar repositories for xfuse
Users that are interested in xfuse are comparing it to the libraries listed below
Sorting:
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆125Updated 6 months ago
- ☆36Updated last month
- ☆153Updated 11 months ago
- Spatial Single-Cell Analysis Toolkit☆104Updated 5 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆96Updated 9 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆91Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆61Updated last week
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆74Updated last year
- ☆53Updated 4 years ago
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆86Updated last year
- Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab☆108Updated 5 months ago
- ☆50Updated last month
- ☆39Updated last year
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆63Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆48Updated last year
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆144Updated last week
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆39Updated last year
- ☆127Updated 3 years ago
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆69Updated 2 years ago
- ☆41Updated last month
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆70Updated last year
- ☆56Updated last year
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆38Updated last year
- ☆60Updated last year
- domain adaptation of spatial and single-cell transcriptome☆28Updated last year
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆46Updated last year
- Reproducing the experiments of the DestVI paper☆22Updated 3 years ago
- data for spacejam2☆18Updated 3 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 9 months ago