Super-resolved spatial transcriptomics by deep data fusion
☆74Mar 30, 2023Updated 3 years ago
Alternatives and similar repositories for xfuse
Users that are interested in xfuse are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆163Dec 20, 2024Updated last year
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆65Mar 18, 2024Updated 2 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Nov 2, 2018Updated 7 years ago
- ☆24Apr 3, 2025Updated last year
- ☆28Nov 21, 2019Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆89Jun 24, 2024Updated last year
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Jun 11, 2021Updated 4 years ago
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆86Oct 22, 2024Updated last year
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆115Jun 9, 2025Updated 11 months ago
- ☆26Apr 8, 2025Updated last year
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆116Nov 19, 2025Updated 6 months ago
- Spatial alignment of single cell transcriptomic data.☆365Jul 1, 2025Updated 10 months ago
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆20Feb 13, 2023Updated 3 years ago
- ☆46May 31, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Deep learning on histopathology images.☆145Sep 8, 2021Updated 4 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆55Aug 11, 2025Updated 9 months ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆171Updated this week
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆132May 29, 2025Updated 11 months ago
- ☆13Sep 30, 2024Updated last year
- ☆62Jul 23, 2024Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆79May 24, 2024Updated last year
- Spatial Single Cell Analysis in Python☆571Updated this week
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆33Nov 30, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆86Apr 13, 2021Updated 5 years ago
- ☆150Mar 20, 2026Updated 2 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆30Jul 22, 2024Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆102Feb 26, 2025Updated last year
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆12Aug 3, 2023Updated 2 years ago
- The source code for "High-Parameter Spatial Multi-Omics through Histology-Anchored Integration"☆35May 15, 2026Updated last week
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 2 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,623May 14, 2026Updated last week
- ☆13May 28, 2025Updated 11 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Spatial reconstruction of dissociated single-cell data☆19Jan 12, 2024Updated 2 years ago
- ☆22Oct 30, 2022Updated 3 years ago
- ☆35Dec 22, 2024Updated last year
- tutorials for spateo package☆20Dec 25, 2024Updated last year
- BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data☆14Apr 29, 2025Updated last year
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆24Feb 24, 2025Updated last year
- Single-cell Hierarchical Poisson Factorization☆74Feb 14, 2026Updated 3 months ago