ludvb / xfuse
Super-resolved spatial transcriptomics by deep data fusion
☆67Updated last year
Related projects ⓘ
Alternatives and complementary repositories for xfuse
- ☆94Updated 3 weeks ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆55Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆68Updated 10 months ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆104Updated 2 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆85Updated last week
- Her2 Breast Cancer Project☆57Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆53Updated 5 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆35Updated 3 months ago
- ☆107Updated 2 years ago
- ☆48Updated 3 years ago
- ☆31Updated 3 weeks ago
- ☆33Updated 7 months ago
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆56Updated 11 months ago
- ☆97Updated 6 months ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆137Updated this week
- Spatial Single-Cell Analysis Toolkit☆74Updated 2 months ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆45Updated 7 months ago
- domain adaptation of spatial and single-cell transcriptome☆24Updated last month
- Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab☆79Updated last week
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆38Updated 3 years ago
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆49Updated 2 years ago
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆32Updated 2 years ago
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆71Updated 5 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆77Updated last year
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆62Updated 6 months ago
- Code used to benchmark Xenium☆40Updated 4 months ago
- ☆43Updated this week
- Join subcellular Visium HD bins into cells☆52Updated this week
- ☆42Updated 5 months ago
- Reproducing the experiments of the DestVI paper☆17Updated 2 years ago