cantin-ortiz / molecular-atlasLinks
This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".
☆16Updated 4 years ago
Alternatives and similar repositories for molecular-atlas
Users that are interested in molecular-atlas are comparing it to the libraries listed below
Sorting:
- Allen Brain Atlas utilities, parsers and data structures☆11Updated 7 years ago
- Repository for storing prototype functionality implementations for the BKP☆27Updated 2 weeks ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆37Updated last month
- Example vignette for dotdotdot software☆18Updated 4 years ago
- Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas☆76Updated last week
- Building Gene Sets and Mapping mFISH Data☆16Updated last year
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 8 months ago
- Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping☆14Updated 3 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Updated 9 years ago
- ABBA, controlled from python☆13Updated 2 months ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆49Updated 3 years ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆16Updated last year
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆12Updated last month
- Spatial analysis of FISH data☆30Updated 2 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- Human cortical cell types☆24Updated 5 years ago
- ☆29Updated last year
- AllenDigger, a tool for spatial expression data visualization, spatial heterogeneity delineation and single cell registration based on Al…☆14Updated 2 years ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆23Updated this week
- Analysis of smFISH data☆11Updated 6 years ago
- Interactive visualization of spatial omics data☆58Updated this week
- A scalable machine learning pipeline for probe specificity prediction.☆14Updated last year
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆46Updated last year
- ☆62Updated this week
- ☆9Updated 6 years ago
- MS Word template for styling a manuscript for a bioRxiv submission☆38Updated 6 years ago
- COmmon COordinate FRAMEwork in R☆36Updated 5 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 6 months ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆21Updated last week