Su-informatics-lab / DSTGLinks
Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
☆39Updated 3 years ago
Alternatives and similar repositories for DSTG
Users that are interested in DSTG are comparing it to the libraries listed below
Sorting:
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- End-to-end analysis of spatial multi-omics data☆93Updated last month
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆41Updated 3 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆33Updated 2 years ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆43Updated 2 years ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆69Updated last year
- Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network☆105Updated 2 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆94Updated 7 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆37Updated last year
- Single-cell biological network inference using a heterogeneous graph transformer☆76Updated 7 months ago
- ☆49Updated 7 months ago
- ☆60Updated 2 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆46Updated 4 years ago
- Code for the spatialLIBD R/Bioconductor package and shiny app☆96Updated last week
- ☆45Updated 2 months ago
- Reproducing result from the paper☆34Updated 4 years ago
- spatial transcriptome, single cell☆70Updated 2 years ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆103Updated this week
- ☆44Updated 3 years ago
- Deep Learning based cell composition analysis with Scaden.☆82Updated 11 months ago
- Spatially resolved transcriptomic analysis☆60Updated 2 years ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆72Updated 8 months ago
- ☆46Updated last year
- SPROD: Spatial expression profiling de-noising☆37Updated 2 years ago
- Predict RNA velocity through deep learning☆70Updated last year
- overview of spatial datasets☆76Updated last year
- Reproducing the experiments of the DestVI paper☆19Updated 3 years ago
- scLearn:Learning for single cell assignment☆35Updated 9 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated 2 months ago
- Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis☆55Updated 3 months ago