SpatialTranscriptomicsResearch / std-nb
Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018
☆22Updated 6 years ago
Alternatives and similar repositories for std-nb:
Users that are interested in std-nb are comparing it to the libraries listed below
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 2 years ago
- ☆31Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- ☆33Updated 5 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- ☆36Updated last year
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆28Updated 4 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆19Updated last year
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Single-cell Case Control Analysis☆48Updated 4 months ago
- a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data☆18Updated 3 years ago
- ☆38Updated 4 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 6 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- scWGCNA☆58Updated 2 years ago
- ☆45Updated 7 months ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- ☆12Updated 5 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆47Updated 4 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 3 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Updated 4 years ago
- ☆28Updated 6 years ago
- ☆29Updated last year
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago