Code associated with the manuscript Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in the liver
☆22Aug 19, 2022Updated 3 years ago
Alternatives and similar repositories for ST-mLiver
Users that are interested in ST-mLiver are comparing it to the libraries listed below
Sorting:
- These are code and scripts for MVI+ HCC scRNA-seq analysis.☆19Aug 24, 2023Updated 2 years ago
- A record of the analysis pipelines used to create the HTAPP data☆34Apr 15, 2025Updated 10 months ago
- ☆21Dec 23, 2024Updated last year
- ☆12Jan 31, 2023Updated 3 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- ☆18Jan 20, 2026Updated last month
- SGD/ADAM/Amsgrad/AdamW/RAdam/Lookahead☆10Nov 18, 2019Updated 6 years ago
- Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.☆13Oct 27, 2023Updated 2 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 2 years ago
- ☆11May 24, 2024Updated last year
- The code for processing single cell RNA-Seq dataset from ESCC cohorts☆12May 13, 2021Updated 4 years ago
- ☆13Dec 15, 2021Updated 4 years ago
- Functional Annotation for Single-Cell Transcriptomics☆11Jun 29, 2024Updated last year
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 5 years ago
- Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)☆13Jun 9, 2021Updated 4 years ago
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆16Mar 11, 2024Updated last year
- ☆15Jun 2, 2021Updated 4 years ago
- MATLAB MEX implementation of SVRG-SBB algorithms☆12Nov 28, 2017Updated 8 years ago
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 3 years ago
- ☆12Sep 29, 2023Updated 2 years ago
- Draw phylogenetic trees of tumor evolution☆87Jul 21, 2023Updated 2 years ago
- ☆128Mar 27, 2022Updated 3 years ago
- ☆14Jul 27, 2025Updated 7 months ago
- Spatial Cellular Estimator for Tumors☆61Feb 9, 2026Updated 3 weeks ago
- ☆23May 7, 2025Updated 9 months ago
- Image processing pipeline for spatial projects☆17Aug 3, 2023Updated 2 years ago
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆14Oct 19, 2023Updated 2 years ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Dec 7, 2022Updated 3 years ago
- ☆17Mar 27, 2023Updated 2 years ago
- ☆15Oct 21, 2020Updated 5 years ago
- UZH Epi/Biostat Methods Seminar Spring 2020: Deep Learning☆13May 7, 2020Updated 5 years ago
- Code used to benchmark Xenium☆77Jun 30, 2024Updated last year
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Jul 29, 2025Updated 7 months ago
- A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simul…☆16Aug 9, 2025Updated 6 months ago
- Computational identification of targets for CAR-T cell therapy in AML☆21Dec 25, 2022Updated 3 years ago
- ☆16Apr 11, 2022Updated 3 years ago
- ☆17Mar 6, 2024Updated last year
- HCC single cell analysis for Alvarez, Benhammou et al.☆17Apr 30, 2022Updated 3 years ago
- ☆17Sep 13, 2023Updated 2 years ago