almaan / ST-mLiverLinks
Code associated with the manuscript Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in the liver
☆19Updated 3 years ago
Alternatives and similar repositories for ST-mLiver
Users that are interested in ST-mLiver are comparing it to the libraries listed below
Sorting:
- ☆30Updated 6 months ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆12Updated last year
- Image processing pipeline for spatial projects☆15Updated 2 years ago
- Spatial transcriptomics of heart tissue☆27Updated 3 years ago
- The code for processing single cell RNA-Seq dataset from ESCC cohorts☆11Updated 4 years ago
- ☆23Updated 2 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆52Updated 10 months ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Updated 2 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- ☆31Updated 8 months ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆29Updated 2 years ago
- Code for the spatial transcriptomic paper on IPF lungs☆20Updated last year
- ☆40Updated 2 years ago
- ☆16Updated last year
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Updated 3 years ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆13Updated last year
- ☆21Updated 10 months ago
- ☆15Updated 3 years ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Updated last year
- ☆23Updated 2 years ago
- Lung cancer 10X analysis☆11Updated 4 years ago
- ☆13Updated last year
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 3 years ago
- ☆20Updated 2 years ago
- Scanner of specific spatial patterns in tissues☆14Updated 3 years ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆20Updated last year
- code and dataset for spatialDWLS☆14Updated 4 years ago
- Single-Cell Inference of Class Switch Recombination☆19Updated last month
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆29Updated 4 years ago