almaan / ST-mLiverLinks
Code associated with the manuscript Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in the liver
☆18Updated 2 years ago
Alternatives and similar repositories for ST-mLiver
Users that are interested in ST-mLiver are comparing it to the libraries listed below
Sorting:
- Image processing pipeline for spatial projects☆15Updated 2 years ago
- Spatial transcriptomics of heart tissue☆22Updated 3 years ago
- ☆22Updated 2 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Updated 3 years ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆12Updated last year
- ☆31Updated 5 months ago
- ☆29Updated 3 months ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Updated 2 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆28Updated last year
- The code for processing single cell RNA-Seq dataset from ESCC cohorts☆10Updated 4 years ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 9 months ago
- ☆18Updated 2 years ago
- ☆13Updated last year
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆36Updated last year
- code and dataset for spatialDWLS☆13Updated 4 years ago
- ☆13Updated 9 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Updated 9 months ago
- Code for the spatial transcriptomic paper on IPF lungs☆18Updated last year
- ☆23Updated 2 years ago
- Lung cancer 10X analysis☆11Updated 4 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 5 months ago
- ☆21Updated 7 months ago
- ☆37Updated 2 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆49Updated 6 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 5 months ago
- ☆21Updated last year
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆32Updated last year
- SPatial INtegration of spatially resolved transcriptomics datasets☆17Updated 4 months ago