A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets
☆11Mar 4, 2025Updated last year
Alternatives and similar repositories for st_viewer
Users that are interested in st_viewer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Feb 26, 2021Updated 5 years ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Jun 11, 2021Updated 4 years ago
- ☆15Sep 27, 2022Updated 3 years ago
- COmmon COordinate FRAMEwork in R☆41May 19, 2020Updated 5 years ago
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆13Mar 20, 2021Updated 5 years ago
- Spatial analysis of FISH data☆33May 20, 2025Updated 10 months ago
- Snakemake pipeline for plate scATAC-seq processing☆26Dec 7, 2023Updated 2 years ago
- Spatial mapping of cell types by integration of transcriptomics data☆100Jun 30, 2022Updated 3 years ago
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Nov 26, 2023Updated 2 years ago
- Automated cell filtering for single-cell RNA sequencing data☆26Nov 14, 2023Updated 2 years ago
- Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data☆13Jan 25, 2026Updated 2 months ago
- ☆31Apr 9, 2022Updated 4 years ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆29Sep 4, 2023Updated 2 years ago
- Six hour hands-on to creating publication-quality plots in R☆43Mar 20, 2026Updated 3 weeks ago
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago
- ☆12Jul 19, 2019Updated 6 years ago
- ☆11Feb 18, 2019Updated 7 years ago
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 5 years ago
- C++ implementation of the Diffusion Map, with Python bindings☆10Aug 22, 2017Updated 8 years ago
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 5 years ago
- ☆11Nov 27, 2019Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Generate amazing umap network graphs☆11Mar 16, 2021Updated 5 years ago
- Classification of Single cells by Transfer Learning☆11Oct 11, 2025Updated 6 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Mar 25, 2024Updated 2 years ago
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 5 years ago
- A simple implementation of UMAP, TSNE and GDR across frameworks and libraries☆13Dec 10, 2024Updated last year
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 2 years ago
- Genomics data re-analysis☆23Updated this week
- Ligand-Receptor docking with AutoDock Vina☆12Mar 21, 2024Updated 2 years ago
- Tutorials for Squidpy☆34Dec 18, 2025Updated 4 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.☆24Jun 15, 2018Updated 7 years ago
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆94Mar 26, 2026Updated 3 weeks ago
- Synthetic histology using GANs, for deep learning model explainability and trainee education.☆16Jan 5, 2024Updated 2 years ago
- ☆31Apr 13, 2021Updated 5 years ago
- ☆14Jul 1, 2025Updated 9 months ago
- A fast algorithm tracking real time deformable planers☆19Jan 6, 2023Updated 3 years ago
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆21Mar 4, 2020Updated 6 years ago