A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets
☆11Mar 4, 2025Updated last year
Alternatives and similar repositories for st_viewer
Users that are interested in st_viewer are comparing it to the libraries listed below
Sorting:
- ☆15Sep 27, 2022Updated 3 years ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Feb 26, 2021Updated 5 years ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Jun 11, 2021Updated 4 years ago
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- COmmon COordinate FRAMEwork in R☆40May 19, 2020Updated 5 years ago
- ☆13Mar 20, 2021Updated 4 years ago
- Spatial analysis of FISH data☆33May 20, 2025Updated 9 months ago
- ☆20May 1, 2023Updated 2 years ago
- ☆11Feb 18, 2019Updated 7 years ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 3 years ago
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Nov 26, 2023Updated 2 years ago
- Примеры использования https://github.com/shtrih-m/fr_drv_ng☆10Feb 21, 2025Updated last year
- ☆29Sep 4, 2023Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Mar 25, 2024Updated last year
- Automated cell filtering for single-cell RNA sequencing data☆26Nov 14, 2023Updated 2 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Dec 7, 2023Updated 2 years ago
- Spatial mapping of cell types by integration of transcriptomics data☆100Jun 30, 2022Updated 3 years ago
- ☆31Apr 9, 2022Updated 3 years ago
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 5 years ago
- Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.☆24Jun 15, 2018Updated 7 years ago
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 5 years ago
- Tutorials for Squidpy☆34Dec 18, 2025Updated 2 months ago
- ☆21May 6, 2025Updated 10 months ago
- ☆14Jul 1, 2025Updated 8 months ago
- Detection and classification selective sweep use domain adaptive model☆10Apr 29, 2024Updated last year
- Six hour hands-on to creating publication-quality plots in R☆42Oct 26, 2023Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆34Jul 1, 2024Updated last year
- notebook repository☆12Jan 17, 2022Updated 4 years ago
- CORNAS is a fast method for reliable DEG calls in unreplicated conditions.☆13Jul 14, 2019Updated 6 years ago
- Lyrics mod for Beat Saber (Oculus Quest)☆16Oct 15, 2021Updated 4 years ago
- ☆11Feb 2, 2026Updated last month
- ☆10May 31, 2022Updated 3 years ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆38Sep 17, 2025Updated 5 months ago
- DragonBall Online Client Development (Base: KR 0.50)☆10Jul 31, 2017Updated 8 years ago
- A collection of notebooks to provide examples of using Microns-explorer.org datasets☆40May 30, 2024Updated last year
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆93May 24, 2024Updated last year
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 11 months ago
- Cloud native SDN platform - network control agent☆14Mar 31, 2023Updated 2 years ago