scverse / spatialdata-ioLinks
☆72Updated this week
Alternatives and similar repositories for spatialdata-io
Users that are interested in spatialdata-io are comparing it to the libraries listed below
Sorting:
- Single-cell spatial proteomics analysis that makes you happy!☆38Updated this week
- Spatial Single-Cell Analysis Toolkit☆99Updated 3 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆33Updated last year
- Static plotting for spatialdata☆67Updated this week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆83Updated 2 months ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆76Updated this week
- ☆59Updated this week
- ☆27Updated 11 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆88Updated last year
- https://sparrow-pipeline.readthedocs.io/en/latest/☆31Updated last month
- Interactive visualization of spatial omics data☆67Updated last week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆85Updated last week
- A toolkit for processing multiplexed tissue images☆64Updated last week
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆21Updated 5 months ago
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- comseg☆24Updated 7 months ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 3 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆44Updated this week
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆37Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- ☆13Updated last week
- Python API and Jupyter widget for Vitessce☆56Updated last week
- A pipeline to transform images into valuable analysis items☆15Updated 3 months ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆25Updated last week
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆54Updated this week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆55Updated 3 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Updated 2 months ago
- Integrated pipeline for multiplexed image analysis☆97Updated 6 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆35Updated last week
- ☆28Updated last year