☆103Sep 22, 2026Updated 2 weeks ago
Alternatives and similar repositories for spatialdata-io
Users that are interested in spatialdata-io are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Static plotting for spatialdata☆86Sep 28, 2026Updated last week
- An open and interoperable data framework for spatial omics data☆399Updated this week
- Interactive visualization of spatial omics data☆91Sep 8, 2026Updated last month
- Python API and Jupyter widget for Vitessce☆67Sep 22, 2026Updated 2 weeks ago
- ☆20Sep 17, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Multimodal Data (.h5mu) implementation for Python☆134Oct 2, 2026Updated last week
- Spatial Single Cell Analysis in Python☆601Updated this week
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆295Sep 15, 2026Updated 3 weeks ago
- ☆67Sep 9, 2026Updated last month
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Jul 23, 2026Updated 2 months ago
- Single-cell spatial omics analysis that makes you happy!☆75Updated this week
- Build contrasts for models defined with formulaic☆13Updated this week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆113Sep 28, 2026Updated last week
- Probabilistic cell segmentation for in situ spatial transcriptomics☆193Sep 22, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Fast array utilities☆15Oct 2, 2026Updated last week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆81Aug 22, 2026Updated last month
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 10 months ago
- A multi-dimensional spatial image data structure for scientific Python.☆45Aug 8, 2025Updated last year
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.☆271Updated this week
- Automatically annotate cell types, consistently across samples.☆30Updated this week
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆400Updated this week
- Bayesian Segmentation of Spatial Transcriptomics Data☆216Oct 2, 2026Updated last week
- Configure Vitessce using existing Scverse plotting APIs☆25Aug 7, 2026Updated 2 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆58Nov 13, 2025Updated 10 months ago
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆14Sep 1, 2026Updated last month
- Integrated pipeline for multiplexed image analysis☆108Sep 18, 2026Updated 2 weeks ago
- Nextflow version of Sopa - spatial omics pipeline and analysis☆21Updated this week
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- Manage biological ontologies.☆27Updated this week
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆90May 25, 2026Updated 4 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆36Aug 28, 2026Updated last month
- Slides and Notebooks for scverse 2024☆16Sep 24, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Annotated data.☆776Updated this week
- LIANA+: an all-in-one framework for cell-cell communication☆319Sep 24, 2026Updated 2 weeks ago
- ☆20Sep 24, 2026Updated 2 weeks ago
- ☆38Jan 22, 2026Updated 8 months ago
- Single-cell differential expression☆19Apr 23, 2026Updated 5 months ago
- Join subcellular Visium HD bins into cells☆144Sep 14, 2026Updated 3 weeks ago
- Single-cell perturbation analysis☆347Updated this week