Alternatives and similar repositories for spatialdata-io

Users that are interested in spatialdata-io are comparing it to the libraries listed below

• scverse / spatialdata-plot
  Static plotting for spatialdata
  ☆62Updated this week
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆34Updated this week
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆80Updated last week
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆27Updated 10 months ago
• saeyslab / napari-sparrow
  https://sparrow-pipeline.readthedocs.io/en/latest/
  ☆29Updated this week
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆94Updated last month
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆24Updated last year
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆39Updated 3 weeks ago
• Feanor007 / MESA
  A python package for Multiomics and Ecological Spatial Analysis (MESA)
  ☆20Updated 3 months ago
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆50Updated this week
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆64Updated this week
• scverse / spatialdata-notebooks
  ☆54Updated this week
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆53Updated last month
• MannLabs / scPortrait
  scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images
  ☆47Updated 2 weeks ago
• HiDiHlabs / ssam
  ☆27Updated 9 months ago
• acycliq / pciSeq
  A probabilistic cell typing algorithm for spatial transcriptomics.
  ☆24Updated last month
• EliHei2 / segger_dev
  a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…
  ☆74Updated last week
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆27Updated 10 months ago
• giovp / spatialdata-sandbox
  ☆12Updated 3 months ago
• plevritis-lab / CELESTA
  Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …
  ☆36Updated last year
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆82Updated last year
• seqscope / ficture
  ☆36Updated 2 months ago
• camlab-bioml / starling
  Segmentation error aware clustering for multiplexed imaging
  ☆18Updated 6 months ago
• HelenaLC / SpatialData
  ☆17Updated 2 months ago
• wanglab-broad / ClusterMap
  ClusterMap for multi-scale clustering analysis of spatial gene expression
  ☆45Updated last month
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆14Updated 7 months ago
• linnarsson-lab / FISHscale
  Spatial analysis of FISH data
  ☆31Updated 2 months ago
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆28Updated this week
• BodenmillerGroup / steinbock
  A toolkit for processing multiplexed tissue images
  ☆62Updated last week
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆37Updated 3 weeks ago