SpatialTranscriptomicsResearch / st_pipelineLinks
ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
☆83Updated 4 years ago
Alternatives and similar repositories for st_pipeline
Users that are interested in st_pipeline are comparing it to the libraries listed below
Sorting:
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆84Updated 3 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆105Updated 2 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- ☆81Updated last year
- ☆46Updated 3 years ago
- Mollecular Functional Portraits☆41Updated last year
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆112Updated 2 months ago
- Mouse cell atlas☆59Updated 5 years ago
- Repository for Cibersortx☆60Updated 4 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆107Updated 2 months ago
- ☆61Updated 5 years ago
- ☆110Updated 3 months ago
- ☆63Updated 4 years ago
- ☆68Updated last year
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆88Updated 11 months ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆58Updated last year
- Significance analysis for clustering single-cell RNA-sequencing data☆116Updated 9 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆110Updated last month
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆58Updated 2 weeks ago
- Tools for single-cell data processing☆125Updated last year
- ☆69Updated last year
- R package for Pathway RespOnsive GENe activity inference☆106Updated 2 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆73Updated 5 years ago
- Create stacked violin plot☆49Updated 3 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆93Updated 2 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago