SpatialTranscriptomicsResearch / st_pipeline
ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
☆78Updated 3 years ago
Related projects: ⓘ
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆59Updated 3 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆87Updated 9 months ago
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆48Updated 2 years ago
- R implementation of MULTI-seq sample classification workflow☆59Updated 9 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆64Updated 4 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆92Updated 4 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆71Updated 4 years ago
- ☆56Updated last year
- ☆57Updated 4 years ago
- Tools used in Human Cell Landscape(HCL)☆52Updated 4 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 2 months ago
- ☆57Updated 5 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆90Updated 2 weeks ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆81Updated 3 years ago
- scDIOR: Single cell data IO softwaRe☆130Updated 2 years ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆92Updated 2 weeks ago
- R package for Pathway RespOnsive GENe activity inference☆92Updated last year
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆36Updated 3 years ago
- Repository for Cibersortx☆51Updated 3 years ago
- A Shiny web app for mapping datasets using Seurat v4☆106Updated 5 months ago
- ☆93Updated 10 months ago
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆57Updated 2 years ago
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆42Updated 2 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆112Updated 2 weeks ago
- ☆100Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆96Updated last week
- A repository of pipelines for single-cell data in Nextflow DSL2☆74Updated last year
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆104Updated 11 months ago
- Mouse cell atlas☆58Updated 4 years ago
- ☆64Updated 5 months ago