SpatialTranscriptomicsResearch / st_pipelineLinks
ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
☆84Updated 4 years ago
Alternatives and similar repositories for st_pipeline
Users that are interested in st_pipeline are comparing it to the libraries listed below
Sorting:
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆87Updated 7 months ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- ☆70Updated last year
- ☆73Updated 2 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆109Updated 5 months ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 11 months ago
- Mouse cell atlas☆61Updated 5 years ago
- Single Cell Cluster Evaluation☆97Updated 4 years ago
- ☆31Updated 4 months ago
- A docker image for single-cell analysis☆91Updated this week
- marker-based purification of cell types from single-cell RNA-seq datasets☆127Updated 2 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆118Updated 5 months ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆95Updated 4 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆93Updated last week
- Methods to compute Local Inverse Simpson's Index (LISI)☆68Updated 4 years ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆68Updated last year
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆71Updated 3 years ago
- ☆47Updated 3 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆119Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆110Updated 2 years ago
- ☆125Updated 3 years ago
- scDIOR: Single cell data IO softwaRe☆148Updated 3 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆91Updated 2 years ago