healthdisparities / ryeView external linksLinks
Large scale ancestry inference from PCA data
☆23May 2, 2023Updated 2 years ago
Alternatives and similar repositories for rye
Users that are interested in rye are comparing it to the libraries listed below
Sorting:
- Config and setup to run nf-core/raredisease pipeline☆10Sep 11, 2025Updated 5 months ago
- Detection and classification selective sweep use domain adaptive model☆10Apr 29, 2024Updated last year
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Jun 11, 2021Updated 4 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Jan 15, 2026Updated last month
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Nov 20, 2022Updated 3 years ago
- This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.☆14Aug 6, 2024Updated last year
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 3 months ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆61Sep 19, 2025Updated 4 months ago
- ☆12Jun 7, 2024Updated last year
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated last year
- Code referenced in the manuscript 'The 16S rRNA gene for species and strain-level microbiome analysis'☆10Sep 26, 2019Updated 6 years ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated 10 months ago
- The gview wiki migrated to GitHub.☆11Sep 3, 2020Updated 5 years ago
- VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant…☆15Mar 26, 2024Updated last year
- ☆12Nov 6, 2023Updated 2 years ago
- discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes inc…☆49Feb 7, 2026Updated last week
- ☆14Oct 17, 2024Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆132Dec 8, 2025Updated 2 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Jun 2, 2020Updated 5 years ago
- ☆33Nov 11, 2025Updated 3 months ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆18Nov 14, 2025Updated 3 months ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Apr 18, 2024Updated last year
- SimRA (Simulation based on Random-graphs Algorithms) is a framework for simulating generic and complex evolutionary scenarios of multiple…☆13Nov 28, 2022Updated 3 years ago
- ☆33Nov 6, 2022Updated 3 years ago
- Detecting IBD within low coverage ancient DNA data. Development Repository for software package that contains code for manuscript.☆14Jan 28, 2026Updated 2 weeks ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 8 years ago
- Polygenic score calculation from VCF in Nim.☆15Nov 22, 2020Updated 5 years ago
- ☆21Jan 29, 2026Updated 2 weeks ago
- ☆19Updated this week
- ☆16Jan 5, 2018Updated 8 years ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Dec 4, 2025Updated 2 months ago
- Transformer-based sequence correction method for genome assembly polishing☆99Mar 11, 2025Updated 11 months ago
- Liftover VCF files☆19Dec 10, 2016Updated 9 years ago
- Mitochondria Analyzer☆24Dec 13, 2022Updated 3 years ago
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆18May 9, 2024Updated last year
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆37Feb 15, 2025Updated last year
- WDL’s and Dockerfiles for assembly QC process☆72Jul 26, 2025Updated 6 months ago
- Phasing reads with secondary alignments☆21Nov 30, 2024Updated last year