almaan / stereoscopeLinks
Spatial mapping of cell types by integration of transcriptomics data
☆100Updated 3 years ago
Alternatives and similar repositories for stereoscope
Users that are interested in stereoscope are comparing it to the libraries listed below
Sorting:
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆137Updated 10 months ago
- ☆129Updated last year
- Join subcellular Visium HD bins into cells☆132Updated 2 months ago
- ☆127Updated 3 years ago
- BANKSY: spatial clustering☆133Updated 3 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆147Updated last month
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆109Updated 7 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆88Updated 3 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆79Updated 10 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 5 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆48Updated 4 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆69Updated 2 months ago
- Code used to benchmark Xenium☆73Updated last year
- ☆127Updated last year
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆88Updated last week
- ☆142Updated 8 months ago
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆71Updated 7 months ago
- A tool for semi-automatic cell type harmonization and integration☆117Updated 2 months ago
- Spatial Cellular Estimator for Tumors☆60Updated 2 weeks ago
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 3 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆85Updated 2 years ago
- trajectory inference☆105Updated 11 months ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆62Updated 4 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆141Updated 2 years ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆119Updated 2 months ago
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- Methods to discover gene programs on single-cell data☆168Updated 3 months ago
- Code for the spatialLIBD R/Bioconductor package and shiny app☆108Updated this week
- Metacells - Single-cell RNA Sequencing Analysis☆116Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆80Updated 8 months ago