Rescale genetic polymorphism data to match a common sample size.
☆15Nov 4, 2021Updated 4 years ago
Alternatives and similar repositories for SoFoS
Users that are interested in SoFoS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A method to detect polygenic adaptation in an admixture graph☆12Feb 22, 2018Updated 8 years ago
- R Package for performing Qst-Fst analyses☆21Nov 14, 2017Updated 8 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 3 years ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 8 years ago
- software for the MAPS method☆25Mar 20, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R functions for generating site frequency spectra (SFS) from a VCF file.☆29Feb 13, 2020Updated 6 years ago
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated 2 years ago
- Deleterious mutation prediction pipeline☆13Dec 16, 2024Updated last year
- machine learning applications for dadi☆16Jan 23, 2025Updated last year
- A Framework for Coalescent Simulation in R☆24Mar 20, 2024Updated 2 years ago
- predicting DFE and alpha from polymorphism data☆29Oct 4, 2018Updated 8 years ago
- Multisample Variant Format ToolKit☆10Oct 12, 2021Updated 5 years ago
- ☆17Dec 2, 2015Updated 10 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆14May 1, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆31Sep 19, 2022Updated 4 years ago
- An R package to estimate the timing of selection for a beneficial allele.☆14Dec 2, 2021Updated 4 years ago
- Tools for inference of the DFE with dadi☆15Apr 16, 2021Updated 5 years ago
- Work for the tree sequence inference paper.☆24Oct 19, 2020Updated 6 years ago
- ☆22Jan 11, 2024Updated 2 years ago
- ☆16Mar 20, 2023Updated 3 years ago
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 5 years ago
- ☆22Sep 10, 2020Updated 6 years ago
- Model-free inference of tree sequences from unphased genotypes☆13May 22, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A series of scripts to automate sequence workflows☆18Oct 20, 2026Updated last week
- PHYLIP package starting with version 4.0a☆20Sep 4, 2026Updated last month
- MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets☆33May 20, 2022Updated 4 years ago
- Sweep Inference Framework (controlling for correlation)☆29Jul 10, 2024Updated 2 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Aug 10, 2026Updated 2 months ago
- Modified TIR-Learner for Rice genome☆12Jun 14, 2019Updated 7 years ago
- An R package to help in plotting PCA results nicely.☆12Jan 16, 2020Updated 6 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- PSMC-based Migration and Split Time Inference (MiSTI) from two genomes☆12Oct 5, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Processing protein-coding DNA sequences in frame☆11Updated this week
- cobraa (coalescent based reconstruction of ancient admixture): a hidden Markov model to infer ghost admixture using just a diploid sequen…☆26Jun 17, 2025Updated last year
- ☆24Mar 15, 2026Updated 7 months ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆46Jul 28, 2019Updated 7 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- Find bubbles in the Colored de Bruijn Graph to reconstruct phylogenetic trees☆13Mar 26, 2019Updated 7 years ago
- SNP genotyping in polyploids☆17Aug 12, 2020Updated 6 years ago