☆13May 13, 2024Updated last year
Alternatives and similar repositories for OrientAGraph
Users that are interested in OrientAGraph are comparing it to the libraries listed below
Sorting:
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Nov 29, 2022Updated 3 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Jul 26, 2023Updated 2 years ago
- A tool for divide-and-conquer tree estimation via a shared distance matrix☆10Mar 19, 2019Updated 6 years ago
- Pipeline for phasing sequence data in polyploids. Designed for target enrichment data, but probably works with other data too.☆12Jun 20, 2024Updated last year
- AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestrie…☆11Jun 29, 2023Updated 2 years ago
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated last year
- Faster multispecies coalescent inference using multilocus data☆14Aug 13, 2023Updated 2 years ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated 5 months ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 2 months ago
- An R package to estimate the timing of selection for a beneficial allele.☆14Dec 2, 2021Updated 4 years ago
- Resources for the Col-CEN reference genome assemblies☆11Feb 15, 2022Updated 4 years ago
- ☆13Aug 18, 2023Updated 2 years ago
- ☆15Mar 20, 2023Updated 2 years ago
- chloroplast genome assembly using long reads data☆14Jul 8, 2025Updated 7 months ago
- R Port of psmc☆17Mar 16, 2023Updated 2 years ago
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆18Feb 19, 2026Updated 2 weeks ago
- machine learning applications for dadi☆17Jan 23, 2025Updated last year
- Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)☆14Sep 19, 2017Updated 8 years ago
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated 11 months ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Dec 4, 2025Updated 3 months ago
- An R package to help in plotting PCA results nicely.☆12Jan 16, 2020Updated 6 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Sep 13, 2019Updated 6 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 6 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated 10 months ago
- Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…☆15Aug 14, 2024Updated last year
- Topology weighting from unphased genotypes of any ploidy☆22Dec 16, 2025Updated 2 months ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆18Apr 9, 2025Updated 10 months ago
- Bioinformatics scripts for genome analysis☆17Oct 26, 2022Updated 3 years ago
- ☆17Jan 5, 2021Updated 5 years ago
- Genome Analysis Workshop (Jena 2016) material☆18Mar 3, 2017Updated 9 years ago
- SNP genotyping in polyploids☆17Aug 12, 2020Updated 5 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Updated this week
- ☆21Oct 2, 2024Updated last year
- Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis☆17Jul 25, 2025Updated 7 months ago
- ☆21Jan 11, 2024Updated 2 years ago
- microhaplotype visualizer and analyzer☆20Jun 24, 2021Updated 4 years ago
- Software for detecting introgression using supervised machine learning☆21Nov 21, 2022Updated 3 years ago