☆13May 13, 2024Updated 2 years ago
Alternatives and similar repositories for OrientAGraph
Users that are interested in OrientAGraph are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestrie…☆11Jun 29, 2023Updated 3 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆22Jul 26, 2023Updated 3 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Nov 29, 2022Updated 3 years ago
- Faster multispecies coalescent inference using multilocus data☆15Aug 13, 2023Updated 3 years ago
- A tool for divide-and-conquer tree estimation via a shared distance matrix☆10Mar 19, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 7 months ago
- Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis☆16Jul 25, 2025Updated last year
- Topology weighting from unphased genotypes of any ploidy☆30Updated this week
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated 2 years ago
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆20Jul 17, 2026Updated 3 weeks ago
- Joint inference of heterozygosity rates and runs of homozygosity☆23Updated this week
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year
- Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…☆16Jul 30, 2026Updated 2 weeks ago
- analysis and plotting code for "Admixture into and within Africa" by George Busby et al 2016 (eLife)☆12Jun 16, 2016Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- SNP genotyping in polyploids☆17Aug 12, 2020Updated 6 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆14May 1, 2019Updated 7 years ago
- Resources for the Col-CEN reference genome assemblies☆12Feb 15, 2022Updated 4 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Sep 13, 2019Updated 6 years ago
- Pipeline for phasing sequence data in polyploids. Designed for target enrichment data, but probably works with other data too.☆12Jun 20, 2024Updated 2 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated 10 months ago
- ☆13Aug 18, 2023Updated 2 years ago
- An R package to estimate the timing of selection for a beneficial allele.☆14Dec 2, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Several DNA sequencing algorithms coded in Python: Boyer-Moore, Pigeon Hole, k-mer, Naive, Approximate Matching☆13Oct 19, 2015Updated 10 years ago
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- machine learning applications for dadi☆17Jan 23, 2025Updated last year
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆257Jun 25, 2026Updated last month
- ☆16Mar 20, 2023Updated 3 years ago
- The `awk` script to calculate population stats in VCF files: convenient, simple, flexible☆32May 28, 2026Updated 2 months ago
- ☆24Mar 17, 2026Updated 4 months ago
- Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)☆14Sep 19, 2017Updated 8 years ago
- processing illumina SNP arrays☆20Feb 3, 2017Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- An R package to help in plotting PCA results nicely.☆12Jan 16, 2020Updated 6 years ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Mar 31, 2026Updated 4 months ago
- R Port of psmc☆17Mar 16, 2023Updated 3 years ago
- CoalHMM☆23Nov 4, 2013Updated 12 years ago
- microhaplotype visualizer and analyzer☆22Jun 24, 2021Updated 5 years ago
- A framework for simulation-based inference in evolutionary biology☆28Jan 13, 2026Updated 7 months ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆21Apr 9, 2025Updated last year