marqueda / SFS-scriptsLinks
A collection of tools useful for preparing or manipulating site-frequency spectrum (SFS) files
☆21Updated 2 years ago
Alternatives and similar repositories for SFS-scripts
Users that are interested in SFS-scripts are comparing it to the libraries listed below
Sorting:
- Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.☆11Updated 5 years ago
- ☆12Updated 5 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- ☆40Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- ☆30Updated 3 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- ☆21Updated 11 months ago
- ☆22Updated 3 years ago
- Centromics: visualing centromeres with multiple omics data☆19Updated last year
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- Automated pipeline for running CoalHMM☆13Updated last year
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆30Updated last month
- A genome assembly assessment pipeline.☆37Updated last year
- ☆16Updated 3 years ago
- Tutorials on evolutionary genomics☆45Updated 3 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆33Updated 9 months ago
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆17Updated last year
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Updated 4 years ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆9Updated 4 months ago
- ☆24Updated last year
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread …☆15Updated last year
- Genome Annotation Pipeline☆36Updated 10 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆29Updated last month
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆17Updated last year
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- Pooled Sequencing Analysis for Sex Signal☆11Updated 3 years ago