A collection of tools useful for preparing or manipulating site-frequency spectrum (SFS) files
☆21Mar 20, 2023Updated 3 years ago
Alternatives and similar repositories for SFS-scripts
Users that are interested in SFS-scripts are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆181Apr 17, 2026Updated 3 months ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆29Feb 13, 2020Updated 6 years ago
- Scripts for analysis used during the course☆98Apr 30, 2024Updated 2 years ago
- Tutorials on evolutionary genomics☆48Mar 11, 2022Updated 4 years ago
- ☆11Sep 23, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- SMC++ infers population history from whole-genome sequence data.☆177Jan 20, 2024Updated 2 years ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆74Apr 9, 2026Updated 4 months ago
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 5 years ago
- General tools for genomic analyses.☆394Mar 25, 2026Updated 4 months ago
- Topology weighting by iterative sampling of sub-trees☆89Jan 5, 2025Updated last year
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Nov 24, 2020Updated 5 years ago
- Scripts to convert between file formats for various analyses☆16May 10, 2025Updated last year
- ☆16Jan 6, 2022Updated 4 years ago
- Heuristic search algorithm for fitting qpGraph models☆11Aug 4, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 3 years ago
- ☆24Jun 9, 2017Updated 9 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆48Mar 7, 2024Updated 2 years ago
- Population genetic summary statistics☆40Sep 28, 2023Updated 2 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 7 months ago
- A python implementation of "Risk of non Adaptedness" method (with a bit of R too!)☆10Aug 2, 2021Updated 5 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆72Oct 24, 2025Updated 9 months ago
- Linear time detection of Identity by Descent☆13Jul 22, 2011Updated 15 years ago
- R package for analysis of hybrids and hybrid zones☆21Dec 30, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆192Dec 19, 2024Updated last year
- ☆19May 10, 2023Updated 3 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 2 years ago
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated 6 months ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆43Mar 4, 2024Updated 2 years ago
- Code to compute the XP-CLR statistic to infer natural selection☆107Jun 13, 2022Updated 4 years ago
- Program for analysing NGS data.☆263Mar 6, 2025Updated last year
- Repository for speciation genomics website☆28May 27, 2026Updated 2 months ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Programs to analyse NGS data for population genetics purposes☆181Aug 27, 2024Updated last year
- Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.☆11Feb 15, 2020Updated 6 years ago
- Topology weighting from unphased genotypes of any ploidy☆30Jun 17, 2026Updated last month
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Apr 25, 2024Updated 2 years ago
- Tutorials on phylogenetic and phylogenomic inference☆402Apr 12, 2026Updated 3 months ago
- A KMER-based genome-wIde Assocation testing approach on polyploids☆67Jul 29, 2026Updated last week
- ☆14Mar 7, 2021Updated 5 years ago