shenglin-liu / vcf2sfsLinks
R functions for generating site frequency spectra (SFS) from a VCF file.
☆28Updated 5 years ago
Alternatives and similar repositories for vcf2sfs
Users that are interested in vcf2sfs are comparing it to the libraries listed below
Sorting:
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆37Updated last year
- MSMC2 Scripts☆27Updated 2 weeks ago
- Quantifying Introgression via Branch Lengths☆54Updated 3 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆30Updated last month
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- GONE: Scripts, programs and an example data set☆47Updated 2 months ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆66Updated last year
- Infer demographic history with the Moran model☆48Updated 3 months ago
- ☆24Updated 8 years ago
- Presentations from the course☆38Updated 2 years ago
- ☆19Updated 3 years ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Topology weighting by iterative sampling of sub-trees☆81Updated 9 months ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Updated last year
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆63Updated 11 months ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆27Updated 7 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- ☆27Updated 2 years ago
- Tutorials on phylogenetic and phylogenomic inference☆49Updated 5 months ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆20Updated 4 months ago
- Tutorial on using popular tools for learning about population history☆51Updated 7 years ago
- Methods for examining PCA locally along the genome.☆83Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- ☆31Updated 2 years ago
- Sex assignment through coverage☆20Updated 4 months ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Updated 6 years ago
- ☆52Updated 3 months ago