Alternatives and similar repositories for vcf2sfs:

Users that are interested in vcf2sfs are comparing it to the libraries listed below

• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆23Updated 11 months ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆30Updated 11 months ago
• clairemerot / angsd_pipeline
  ☆26Updated last year
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆21Updated 5 months ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 3 years ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆27Updated last week
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆16Updated 3 weeks ago
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆18Updated last week
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated 10 months ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆41Updated 5 years ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated 10 months ago
• rtfcoimbra / Coimbra-et-al-2021_CurrBiol
  Code used to analyse WGS data of giraffe in Coimbra et al. 2021
  ☆11Updated last year
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆49Updated 6 years ago
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆15Updated 4 years ago
• popgenDK / SATC
  Sex assignment through coverage
  ☆17Updated 11 months ago
• speciationgenomics / presentations
  Presentations from the course
  ☆36Updated last year
• clairemerot / physalia_adaptation_course
  ☆18Updated last year
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 3 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆41Updated 5 years ago
• ThibaultLeroyFr / Intro2PopGenomics
  Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts
  ☆19Updated 5 years ago
• esayyari / DiscoVista
  ☆38Updated last year
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆42Updated 2 years ago
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 6 years ago
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆44Updated last year
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆47Updated last year
• zhangfumin / domestication
  ☆17Updated 2 years ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 5 years ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆57Updated 3 months ago
• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆19Updated 2 years ago