☆10Sep 4, 2025Updated 6 months ago
Alternatives and similar repositories for SNPfiltR
Users that are interested in SNPfiltR are comparing it to the libraries listed below
Sorting:
- ☆12Mar 11, 2025Updated last year
- Random scripts, mostly for dealing with RADseq data and DNA sequence alignments☆18Oct 2, 2025Updated 5 months ago
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 4 years ago
- Primer Seek in RNA-Seq. Designs RT-PCR primers that validate alternative splicing events from RNA-Seq data.☆13Nov 27, 2016Updated 9 years ago
- Counterfactual Inference by Machine Learning and Attribution Models☆15Aug 24, 2023Updated 2 years ago
- An R function to compute Concordance Factors from SNP datasets☆15Dec 4, 2025Updated 3 months ago
- ☆17Jul 27, 2023Updated 2 years ago
- ☆10Nov 4, 2021Updated 4 years ago
- Python Breeding Optimizer and Simulator: A Python library for simulating and optimizing breeding pipelines.☆11Dec 10, 2024Updated last year
- A spotty theme (light and dark) for Obsidian☆14Feb 28, 2024Updated 2 years ago
- Collection of Python scripts for parsing/analyses of RAD-seq data☆25Mar 5, 2025Updated last year
- Guided construction of single cell reference☆12Jul 3, 2023Updated 2 years ago
- SKATE R Utilities☆10Mar 7, 2026Updated 2 weeks ago
- Pipeline to design taxon-specific primes in defined bacterial communities.☆26Jan 28, 2025Updated last year
- Added functions for Echidna in R☆11Apr 14, 2023Updated 2 years ago
- Using genome-wide markers for polyploid breeding☆12Mar 8, 2026Updated 2 weeks ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 7 years ago
- A script to re-color a FigTree saved Nexus file☆13Jan 29, 2017Updated 9 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 2 years ago
- An open source system for processing taxonomic descriptions based on the DELTA – DEscription Language for TAxonomy format.☆10Dec 9, 2025Updated 3 months ago
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.☆10Apr 25, 2024Updated last year
- QTL analysis in diallel populations☆12Mar 13, 2026Updated last week
- Interfacing R's Spectra package with the Python world.☆13Mar 6, 2026Updated 2 weeks ago
- Alfred 3 workflow for tagging files with Alfred☆12Feb 28, 2018Updated 8 years ago
- Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data☆16Mar 14, 2022Updated 4 years ago
- Critical downstream analysis steps for single-cell RNA sequencing data☆13Feb 21, 2021Updated 5 years ago
- ☆13Aug 30, 2023Updated 2 years ago
- Docker container for bioinformatics tools and pipelines☆15Oct 11, 2024Updated last year
- Analyses pipelines that I use for my work☆12Jul 7, 2021Updated 4 years ago
- RPHAST: Phylogenetic Analysis with Space/Time Models in R☆13Nov 25, 2024Updated last year
- ☆13Aug 15, 2025Updated 7 months ago
- This computational method has been published in BMC genomics as: "Identifying branch-specific positive selection throughout the regulato…☆17Dec 19, 2025Updated 3 months ago
- GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation☆22Mar 26, 2022Updated 3 years ago
- Some sleuth walkthroughs to help you get started☆10Jul 26, 2018Updated 7 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆17Dec 29, 2022Updated 3 years ago
- 2024 BreedWheat Genomic Selection pipeline☆14Jan 3, 2024Updated 2 years ago
- Yield Prediction Using Deep Learning on Multivariate Time Series Data☆18May 22, 2021Updated 4 years ago
- R functions related to pedigrees☆14Sep 29, 2025Updated 5 months ago
- ☆20Feb 24, 2023Updated 3 years ago