Alternatives and similar repositories for fineRADstructure-tools

Users that are interested in fineRADstructure-tools are comparing it to the libraries listed below

• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆33Updated 4 years ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆26Updated 11 months ago
• esayyari / DiscoVista
  ☆40Updated last year
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated last year
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆42Updated 6 years ago
• fethalen / Patchwork
  Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data
  ☆36Updated last year
• pimbongaerts / radseq
  Collection of Python scripts for parsing/analyses of RAD-seq data
  ☆22Updated 4 months ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated last month
• meganlsmith / delimitR
  This repository contains the code and manual for the R package delimitR.
  ☆17Updated 3 years ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆60Updated 8 months ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆30Updated 2 months ago
• clairemerot / angsd_pipeline
  ☆26Updated 2 years ago
• rapidspeciation / biodiversity_genomics_course
  biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute
  ☆54Updated last month
• sjoleary / SNPFILT
  ☆19Updated 7 years ago
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆48Updated last year
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆53Updated 2 years ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 6 years ago
• ranwez / MACSE_V2_PIPELINES
  This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…
  ☆34Updated last year
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago
• FePhyFoFum / SortaDate
  ☆18Updated 4 years ago
• speciationgenomics / presentations
  Presentations from the course
  ☆38Updated last year
• edgardomortiz / paralog-finder
  Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)
  ☆10Updated 5 years ago
• btmartin721 / raxml_ascbias
  Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
  ☆15Updated 9 months ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆46Updated 9 months ago
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆28Updated 5 years ago
• MaoYafei / TREEasy
  A tool to infer species tree and phylogenetic network from multilocus data
  ☆32Updated 5 years ago
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆79Updated 6 months ago
• CoBiG2 / RAD_Tools
  A collection of usefull tools for RAD or GBS data analysis
  ☆33Updated 4 months ago
• AlexKnyshov / alibaseq
  Alignment-Based Sequence extraction
  ☆15Updated 3 years ago
• LohseLab / gIMble
  A genome-wide IM blockwise likelihood estimation toolkit
  ☆16Updated last year