edgardomortiz / fineRADstructure-toolsLinks
Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)
☆10Updated 5 years ago
Alternatives and similar repositories for fineRADstructure-tools
Users that are interested in fineRADstructure-tools are comparing it to the libraries listed below
Sorting:
- A package for population structure inference from RAD-seq data☆34Updated 4 years ago
- Repository for speciation genomics website☆27Updated 3 months ago
- ☆42Updated 2 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Collection of Python scripts for parsing/analyses of RAD-seq data☆24Updated 9 months ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆36Updated 2 years ago
- Presentations from the course☆38Updated 2 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆32Updated 2 months ago
- Infer demographic history with the Moran model☆50Updated 6 months ago
- Helper scripts for processing and visualization of phylogenetics datasets☆30Updated last year
- This repository contains the code and manual for the R package delimitR.☆17Updated 3 years ago
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆21Updated 4 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Methods for examining PCA locally along the genome.☆86Updated last year
- GONE: Scripts, programs and an example data set☆48Updated 5 months ago
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Updated 6 years ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Quartet Sampling method for phylogenetic branch support evaluation☆19Updated last year
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆68Updated 2 months ago
- R package for analysis of hybrids and hybrid zones☆21Updated last year
- Code for computing various support scores for internodes☆19Updated 5 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- ☆18Updated 5 years ago
- Phylogenetic penalized likelihood☆54Updated 6 months ago
- A collection of usefull tools for RAD or GBS data analysis☆33Updated 9 months ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- Topology weighting by iterative sampling of sub-trees☆82Updated 11 months ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated last year