microbiome-resources / Qiime2-Microbiome-workshop
☆15Updated last year
Alternatives and similar repositories for Qiime2-Microbiome-workshop:
Users that are interested in Qiime2-Microbiome-workshop are comparing it to the libraries listed below
- Metagenomics Workshop☆28Updated 8 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆31Updated 4 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 2 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated 9 months ago
- A repository for the lessons and notebooks used for Binder tutorials☆19Updated 4 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆53Updated 4 months ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆33Updated 3 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆15Updated last week
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated last week
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Updated 8 months ago
- A microbiome analysis toolkit for R☆21Updated last year
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- ☆19Updated 4 years ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆32Updated 5 years ago
- ☆20Updated 4 years ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- ☆16Updated last year
- ☆27Updated 2 weeks ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 4 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆22Updated 3 years ago
- ☆10Updated 3 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- ☆14Updated 2 months ago
- Compare different differential abundance and expression methods☆50Updated 2 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆27Updated 2 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 9 months ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆36Updated this week
- Computational workflows for metagenomics tasks, by the Bhatt lab☆45Updated last year