Alternatives and similar repositories for q2-greengenes2

Users that are interested in q2-greengenes2 are comparing it to the libraries listed below

• victoriapascal / gutsmash
  gutSMASH
  ☆55Updated 2 months ago
• bhattlab / phanta
  Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
  ☆67Updated last week
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆33Updated last month
• ohmeta / metapi
  A general metagenomics data mining system focus on robust microbiome research
  ☆58Updated last year
• waldronlab / curatedMetagenomicDataAnalyses
  Analyses in R and Python Using curatedMetagenomicData
  ☆32Updated 3 weeks ago
• Finn-Lab / MGS-gut
  Analysing Metagenomic Species (MGS)
  ☆42Updated 5 years ago
• functional-dark-side / agnostos-wf
  ☆45Updated 2 years ago
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆60Updated 9 months ago
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆37Updated last year
• christophertbrown / iRep
  scripts for estimating bacteria replication rates based on population genome copy number variation
  ☆73Updated 5 years ago
• morgannprice / PaperBLAST
  PaperBLAST: find papers about a protein or its homologs
  ☆48Updated last week
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆54Updated 5 years ago
• XiaofangJ / PhaseFinder
  A pipeline to computationally identify invertible DNA regions and quantify their orientations.
  ☆31Updated last year
• biobakery / waafle
  http://huttenhower.sph.harvard.edu/waafle
  ☆22Updated 11 months ago
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆66Updated last year
• qiyunzhu / woltka
  Woltka: a versatile meta'omic data classifier
  ☆75Updated 3 months ago
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆71Updated 11 months ago
• BackofenLab / CRISPRidentify
  ☆31Updated 11 months ago
• epruesse / SINA
  SINA - Reference based multiple sequence alignment
  ☆41Updated 4 years ago
• hzi-bifo / traitar
  From genomes to phenotypes: Traitar, the microbial trait analyzer
  ☆62Updated 6 years ago
• ziyewang / MetaBinner
  ☆61Updated last year
• kevinmcgregor / mdine
  ☆12Updated 4 years ago
• biobakery / shortbred
  ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…
  ☆31Updated 10 months ago
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆27Updated 7 years ago
• YDaiLab / MiMeNet
  ☆18Updated 4 years ago
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆35Updated 3 years ago
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆52Updated 3 weeks ago
• snayfach / MicrobeCensus
  MicrobeCensus estimates the average genome size of microbial communities from metagenomic data
  ☆47Updated 5 years ago