biocore / q2-greengenes2
A QIIME 2 plugin for interaction with the Greengenes2 database
☆28Updated 6 months ago
Alternatives and similar repositories for q2-greengenes2:
Users that are interested in q2-greengenes2 are comparing it to the libraries listed below
- Analyses in R and Python Using curatedMetagenomicData☆31Updated 2 weeks ago
- gutSMASH☆53Updated 3 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- Protein Alignment and Detection Interface☆61Updated last year
- Pipeline for major biological analyses.☆34Updated 3 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 5 months ago
- ☆45Updated last year
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- StrainFinder☆26Updated 6 years ago
- A general metagenomics data mining system focus on robust microbiome research☆57Updated 7 months ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 4 months ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 4 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆33Updated last year
- Metagenome analysis using the Kraken software suite☆31Updated 2 years ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Updated 2 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- A toolkit for prokaryotic comparative genomics☆47Updated 2 months ago
- BEAV: Bacterial Element Annotation reVamped☆64Updated 5 months ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- ☆27Updated 3 months ago
- ☆32Updated last year
- ☆41Updated 4 years ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆20Updated 3 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 2 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆58Updated last week
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 7 months ago