A QIIME 2 plugin for interaction with the Greengenes2 database
☆33Oct 1, 2024Updated last year
Alternatives and similar repositories for q2-greengenes2
Users that are interested in q2-greengenes2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Processing support for Greengenes2☆15Jul 31, 2023Updated 2 years ago
- ☆43Oct 10, 2025Updated 8 months ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 6 years ago
- mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models☆14Aug 20, 2025Updated 9 months ago
- Predict AMPs in (meta)genomes and peptides☆95Nov 24, 2025Updated 6 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 9 months ago
- ☆21Dec 15, 2020Updated 5 years ago
- Toolkit for large scale ADMET modelling☆30May 25, 2026Updated 3 weeks ago
- Import qiime2 artifacts to R☆182Dec 12, 2024Updated last year
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆228Mar 24, 2026Updated 2 months ago
- REference Sequence annotation and CuRatIon Pipeline☆100Jun 3, 2026Updated 2 weeks ago
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆25Nov 3, 2025Updated 7 months ago
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆31Apr 11, 2023Updated 3 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆26Apr 20, 2023Updated 3 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 6 months ago
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆17Mar 31, 2022Updated 4 years ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆19Oct 21, 2022Updated 3 years ago
- A pipeline for the identification of fungi in public metagenomics datasets☆18Nov 23, 2020Updated 5 years ago
- Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…☆13Jan 14, 2023Updated 3 years ago
- a user-friendly and flexible pipeline for prokaryote genome analysis☆69Mar 17, 2026Updated 3 months ago
- ☆42Apr 2, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆27Mar 23, 2026Updated 2 months ago
- ☆13May 27, 2025Updated last year
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆334Jun 3, 2026Updated 2 weeks ago
- Make Picrust2 Output Analysis and Visualization Easier☆199Jun 5, 2026Updated last week
- Mapping-Assisted Targeted-Assembly for Metagenomics☆27Mar 28, 2025Updated last year
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆168Jun 10, 2026Updated last week
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- Software implementation for tensor-tensor m-product☆14Dec 14, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆22Dec 11, 2024Updated last year
- The Metagenomics-Toolkit is a scalable, data agnostic workflow that automates the analysis of short and long metagenomic reads obtained f…☆25Updated this week
- Case-control matching for microbiome data☆10Aug 8, 2023Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Dec 16, 2022Updated 3 years ago
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated last year
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆83May 13, 2026Updated last month