A QIIME 2 plugin for interaction with the Greengenes2 database
☆33Oct 1, 2024Updated last year
Alternatives and similar repositories for q2-greengenes2
Users that are interested in q2-greengenes2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Processing support for Greengenes2☆15Jul 31, 2023Updated 2 years ago
- Import qiime2 artifacts to R☆183Dec 12, 2024Updated last year
- MicrobeRX☆17Aug 11, 2025Updated 11 months ago
- ☆43Oct 10, 2025Updated 9 months ago
- Predict AMPs in (meta)genomes and peptides☆96Jul 19, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 6 years ago
- mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models☆15Aug 20, 2025Updated 11 months ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 10 months ago
- ☆21Dec 15, 2020Updated 5 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆229Mar 24, 2026Updated 4 months ago
- REference Sequence annotation and CuRatIon Pipeline☆101Jul 21, 2026Updated last week
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 8 months ago
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆31Apr 11, 2023Updated 3 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆26Apr 20, 2023Updated 3 years ago
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆19Oct 21, 2022Updated 3 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆17Mar 31, 2022Updated 4 years ago
- A tool to assemble high-quality phages from metagenomes.☆22May 22, 2026Updated 2 months ago
- Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…☆13Jan 14, 2023Updated 3 years ago
- A pipeline for the identification of fungi in public metagenomics datasets☆18Nov 23, 2020Updated 5 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆335Updated this week
- ☆43Apr 2, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Case-control matching for microbiome data☆10Aug 8, 2023Updated 2 years ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆28Mar 23, 2026Updated 4 months ago
- ☆13May 27, 2025Updated last year
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Mapping-Assisted Targeted-Assembly for Metagenomics☆27Mar 28, 2025Updated last year
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆169Jun 10, 2026Updated last month
- Make Picrust2 Output Analysis and Visualization Easier☆199Jun 30, 2026Updated 3 weeks ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated last year
- Pipeline for the Nanopore 16S and ITS long read clustering and taxonomy classification☆20Jun 12, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Software implementation for tensor-tensor m-product☆14Dec 14, 2023Updated 2 years ago
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆26Nov 3, 2025Updated 8 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Jan 29, 2023Updated 3 years ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- Pipeline which removes human DNA from microbial shotgun samples.☆16Aug 25, 2025Updated 11 months ago
- Snakemake workflow for comparison of differential abundance ranks☆13Mar 22, 2024Updated 2 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models