biocore / q2-greengenes2
A QIIME 2 plugin for interaction with the Greengenes2 database
☆27Updated 5 months ago
Alternatives and similar repositories for q2-greengenes2:
Users that are interested in q2-greengenes2 are comparing it to the libraries listed below
- gutSMASH☆53Updated 2 months ago
- Protein Alignment and Detection Interface☆61Updated 11 months ago
- A general metagenomics data mining system focus on robust microbiome research☆56Updated 6 months ago
- Analyses in R and Python Using curatedMetagenomicData☆29Updated 2 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 4 years ago
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆20Updated 4 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆31Updated last year
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 4 months ago
- ☆45Updated last year
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- Computational workflows for metagenomics tasks, by the Bhatt lab☆46Updated 2 years ago
- Pipeline for major biological analyses.☆34Updated 2 years ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆20Updated 3 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated last month
- Statistical analysis for sparse high-throughput sequencing☆69Updated 2 months ago
- Metagenome analysis using the Kraken software suite☆31Updated 2 years ago
- ☆32Updated last year
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆11Updated 2 years ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- StrainFinder☆26Updated 6 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆70Updated 5 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- ☆18Updated 4 years ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆13Updated last year
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆26Updated 6 years ago
- ☆28Updated 2 months ago