biocore / q2-greengenes2Links
A QIIME 2 plugin for interaction with the Greengenes2 database
☆33Updated last year
Alternatives and similar repositories for q2-greengenes2
Users that are interested in q2-greengenes2 are comparing it to the libraries listed below
Sorting:
- gutSMASH☆55Updated 3 weeks ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated last month
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 4 months ago
- A package to annotate protein sequences☆60Updated 8 months ago
- Analysing Metagenomic Species (MGS)☆42Updated 4 years ago
- ☆45Updated 2 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆35Updated last year
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆37Updated 6 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆61Updated 6 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- A general metagenomics data mining system focus on robust microbiome research☆58Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 9 months ago
- ☆30Updated 2 weeks ago
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆31Updated 5 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated 2 years ago
- Analyses in R and Python Using curatedMetagenomicData☆32Updated 2 weeks ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- ☆40Updated 4 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets☆27Updated 3 weeks ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- ☆18Updated 4 years ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆23Updated 4 years ago
- http://huttenhower.sph.harvard.edu/waafle☆22Updated 10 months ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆14Updated last year
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Updated 2 years ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆27Updated 6 months ago