Alternatives and similar repositories for q2-greengenes2:

Users that are interested in q2-greengenes2 are comparing it to the libraries listed below

• victoriapascal / gutsmash
  gutSMASH
  ☆53Updated last month
• omixer / omixer-rpmR
  An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles
  ☆11Updated 2 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆61Updated 10 months ago
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆32Updated last year
• ohlab / GRiD
  Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …
  ☆32Updated 4 years ago
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆31Updated 11 months ago
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆26Updated 6 years ago
• functional-dark-side / agnostos-wf
  ☆44Updated last year
• EBI-Metagenomics / mettannotator
  ☆62Updated last month
• SegataLab / panphlan
  PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
  ☆45Updated last year
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆45Updated 2 years ago
• ohlab / SMEG
  Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset
  ☆20Updated 4 years ago
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆34Updated 2 years ago
• metaGmetapop / metapop
  A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
  ☆40Updated last year
• happykhan / BRIG
  BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…
  ☆33Updated 5 years ago
• YDaiLab / MiMeNet
  ☆19Updated 4 years ago
• lozuponelab / SCNIC
  Sparse Cooccurence Network Investigation for Compositional data
  ☆24Updated 3 months ago
• XiaofangJ / PhaseFinder
  A pipeline to computationally identify invertible DNA regions and quantify their orientations.
  ☆29Updated last year
• pereiramemo / BiG-MEx
  BiG-MEx implementation as Docker images and R packages
  ☆12Updated 3 years ago
• ohmeta / metapi
  A general metagenomics data mining system focus on robust microbiome research
  ☆56Updated 5 months ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆23Updated this week
• NBChub / bgcflow
  Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
  ☆39Updated last month
• arumugamlab / msamtools
  Metagenomics-related extended functionalities to samtools
  ☆19Updated last year
• leylabmpi / endoR
  Code and manual of the endoR R-package (Ruaud et al, in preparation).
  ☆12Updated last year
• waldronlab / curatedMetagenomicDataAnalyses
  Analyses in R and Python Using curatedMetagenomicData
  ☆29Updated last month
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆75Updated last year
• cssmillie / StrainFinder
  StrainFinder
  ☆27Updated 6 years ago
• jlw-ecoevo / gRodon
  ☆17Updated 2 years ago
• Finn-Lab / MGS-gut
  Analysing Metagenomic Species (MGS)
  ☆41Updated 4 years ago
• SegataLab / metamlst
  MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.
  ☆14Updated last year