biocore / q2-greengenes2Links
A QIIME 2 plugin for interaction with the Greengenes2 database
☆32Updated 11 months ago
Alternatives and similar repositories for q2-greengenes2
Users that are interested in q2-greengenes2 are comparing it to the libraries listed below
Sorting:
- gutSMASH☆55Updated 8 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated 2 months ago
- A general metagenomics data mining system focus on robust microbiome research☆58Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 7 months ago
- ☆45Updated 2 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 3 months ago
- CLI tool to annotate genes with KOfam☆86Updated 2 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆44Updated last year
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆64Updated last year
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆59Updated last year
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆36Updated 6 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- ☆75Updated this week
- Pipeline for major biological analyses.☆35Updated 3 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- A package to annotate protein sequences☆59Updated 6 months ago
- ☆57Updated last year
- ☆30Updated 2 weeks ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- ☆39Updated 3 months ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- Woltka: a versatile meta'omic data classifier☆75Updated last week
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆23Updated 4 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆60Updated 6 years ago
- Convert GTDB taxonomy to NCBI taxdump format☆73Updated 2 years ago
- An R package designed for drawing gene arrow maps☆88Updated last month
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year