Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
☆149Jul 17, 2026Updated 3 months ago
Alternatives and similar repositories for metacoder
Users that are interested in metacoder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- taxonomic classes for R☆51Jul 28, 2025Updated last year
- microbiome R package☆320Updated this week
- Speedy versions of phyloseq functions☆50Apr 21, 2024Updated 2 years ago
- ☆42Jul 31, 2017Updated 9 years ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆175Sep 4, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆118Apr 11, 2023Updated 3 years ago
- Import qiime2 artifacts to R☆185Dec 12, 2024Updated last year
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆21Oct 17, 2023Updated 3 years ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆89Feb 26, 2026Updated 8 months ago
- Accurate sample inference from amplicon data with single nucleotide resolution☆561Jul 31, 2026Updated 2 months ago
- Phylocom R interface☆15Apr 21, 2023Updated 3 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆76Dec 21, 2023Updated 2 years ago
- R interface to GenBank/GenPept files☆14Jan 12, 2021Updated 5 years ago
- An R package for downstream data analysis of microbiome omics data☆295Oct 20, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 6 years ago
- An R pakage to calculate diversity through Hill Numbers☆35Nov 11, 2025Updated 11 months ago
- Phylogenetic analysis in R☆216Oct 21, 2026Updated last week
- A taxonomic toolbelt for R☆303May 12, 2026Updated 5 months ago
- A set of R functions that help faciliate a lot of tedious processing☆19Aug 31, 2018Updated 8 years ago
- Interactive tools for metagenome visualization and binning in R☆27Jun 28, 2018Updated 8 years ago
- Written by Emily Curd (eecurd@g.ucla.edu), Jesse Gomer (jessegomer@gmail.com), Gaurav Kandlikar (gkandlikar@ucla.edu), Zack Gold (zjgold@…☆49Jan 18, 2024Updated 2 years ago
- ☆18Nov 16, 2015Updated 10 years ago
- ARCHIVED Interface to USDA Databases☆13Mar 9, 2026Updated 7 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆33May 24, 2023Updated 3 years ago
- R package for microbiome biomarker discovery☆199Feb 19, 2025Updated last year
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆25Jul 15, 2025Updated last year
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆31Nov 23, 2022Updated 3 years ago
- Look Up Guild Information for Fungi in R☆26Aug 14, 2026Updated 2 months ago
- ☆18Dec 5, 2017Updated 8 years ago
- ☆37Nov 8, 2023Updated 2 years ago
- Interactively explore metagenomes and more from a web browser.☆503Dec 22, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆128Updated this week
- This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://gr…☆16Nov 30, 2023Updated 2 years ago
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆15Dec 18, 2021Updated 4 years ago
- Miscellaneous functions for metagenomic analysis.☆53May 14, 2026Updated 5 months ago
- rOpenSci .github files☆11Jul 29, 2019Updated 7 years ago
- Code, unit tests, and tutorials for running PICRUSt2☆399Updated this week
- in silico plasmid extraction☆13Sep 18, 2017Updated 9 years ago