knights-lab / BugBaseLinks
☆41Updated 7 years ago
Alternatives and similar repositories for BugBase
Users that are interested in BugBase are comparing it to the libraries listed below
Sorting:
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 3 months ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- A shiny package for microbiome functional enrichment analysis☆36Updated 5 months ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Transform files to the microtable object with microeco package☆28Updated last month
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆17Updated 7 years ago
- ☆23Updated 7 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 9 months ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆44Updated this week
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆38Updated last year
- R implementation of the LEfSe method☆59Updated 4 months ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20Updated 8 years ago
- ☆13Updated 9 months ago
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- Genome wide orthology inference and dNdS estimation☆96Updated last week
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 2 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- R package for downstream Microbiome analysis☆30Updated 9 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆44Updated last year
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated last month
- Micro 612 genomics workshop☆37Updated 4 years ago
- A microbiome analysis toolkit for R☆24Updated 2 years ago