Alternatives and similar repositories for BugBase:

Users that are interested in BugBase are comparing it to the libraries listed below

• benjjneb / LRASManuscript
  Reproducible Analyses accompanying DADA2 + PacBio Manuscript
  ☆31Updated 4 years ago
• microsud / dysbiosisR
  The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures
  ☆14Updated 2 years ago
• biobakery / melonnpan
  Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
  ☆35Updated 9 months ago
• shandley / Microbiome-Analysis-Using-R
  Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
  ☆27Updated 2 years ago
• Russel88 / DAtest
  Compare different differential abundance and expression methods
  ☆50Updated 2 years ago
• Lagkouvardos / Rhea
  A set of R scripts for the analysis of microbial profiles
  ☆41Updated 7 months ago
• edamame-course / Metagenome
  ☆23Updated 6 years ago
• microsud / microbiomeutilities
  The is mostly a wrapper tool using phyloseq and microbiome R packages.
  ☆34Updated 2 years ago
• twbattaglia / btools
  A set of R functions that help faciliate a lot of tedious processing
  ☆18Updated 6 years ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆37Updated 2 months ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆30Updated last year
• zifanzhu / MicroPro
  A microbial profiling framework for metagenomic analysis
  ☆24Updated 4 years ago
• nhanhocu / metamicrobiomeR
  An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…
  ☆33Updated 4 years ago
• ggloor / CoDaSeq
  Functions for compositional analysis of high throughput sequencing
  ☆29Updated last year
• YuLab-SMU / plotting-tree-with-data-using-ggtreeExtra
  ☆24Updated 3 years ago
• microUCPH / amplicon_data_analysis
  Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project
  ☆11Updated 2 years ago
• cafferychen777 / MicrobiomeStat
  Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
  ☆36Updated this week
• thomazbastiaanssen / Tjazi
  A microbiome analysis toolkit for R
  ☆21Updated last year
• ChiLiubio / file2meco
  Transform files to the microtable object with microeco package
  ☆24Updated last month
• wdl2459 / ConQuR
  Batch effects removal for microbiome data via conditional quantile regression
  ☆27Updated 2 years ago
• ngs-docs / 2018-cicese-metatranscriptomics
  repo for cicese metatranscriptomics workshop, nov 2018
  ☆14Updated 4 years ago
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆53Updated last week
• knightlab-analyses / reference-frames
  ☆20Updated 4 years ago
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆17Updated 8 months ago
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆70Updated 2 years ago
• jbisanz / MicrobeR
  Handy tools for Microbiome analysis in R
  ☆18Updated 5 years ago
• waldronlab / lefser
  R implementation of the LEfSe method
  ☆53Updated last week
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆54Updated 2 years ago
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆46Updated 8 months ago