knights-lab / BugBaseLinks
☆42Updated 8 years ago
Alternatives and similar repositories for BugBase
Users that are interested in BugBase are comparing it to the libraries listed below
Sorting:
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆34Updated 5 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- ☆78Updated 2 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- R implementation of the LEfSe method☆63Updated 2 months ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated 3 weeks ago
- Transform files to the microtable object with microeco package☆28Updated 3 months ago
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- A shiny package for microbiome functional enrichment analysis☆38Updated last month
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆55Updated 7 months ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20Updated 8 years ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- ☆12Updated 4 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- SourceTracker2☆85Updated last year
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆46Updated this week
- Scripts for stat and plot figures in rice microbiome paper☆30Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆42Updated last year
- Metagenomics Workshop☆27Updated 9 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- ☆23Updated 7 years ago
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆17Updated 8 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Updated 6 months ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- 16S taxonomy assignment using an ecosystem-specific database.☆17Updated 2 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆78Updated 6 months ago
- RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s☆59Updated 3 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Updated 3 years ago