umerijaz / microbiomeSeq
An R package for microbial community analysis in an environmental context
☆66Updated 4 years ago
Alternatives and similar repositories for microbiomeSeq:
Users that are interested in microbiomeSeq are comparing it to the libraries listed below
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆70Updated 2 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- Compare different differential abundance and expression methods☆50Updated 2 years ago
- Speedy versions of phyloseq functions☆46Updated 8 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆31Updated 4 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated last week
- Statistical analysis for sparse high-throughput sequencing☆69Updated last month
- A set of R scripts for the analysis of microbial profiles☆41Updated 7 months ago
- R implementation of the LEfSe method☆53Updated last week
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆27Updated 6 months ago
- Transform files to the microtable object with microeco package☆24Updated last month
- Miscellaneous functions for metagenomic analysis.☆47Updated 6 months ago
- Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files☆31Updated 7 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated last year
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆59Updated 2 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆63Updated last year
- functions for analyzing phyloseq data☆26Updated last week
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 4 years ago
- SHallow shOtGUN profiler☆54Updated 2 years ago
- Microbiome analysis☆51Updated this week
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆36Updated this week
- A robust and fast clustering method for amplicon-based studies☆31Updated last year
- ☆51Updated this week
- Tools for visualising microbial community amplicon data☆68Updated 7 months ago
- ☆20Updated 4 years ago
- diversity estimation under ecological networks☆83Updated last year