umerijaz / microbiomeSeqLinks
An R package for microbial community analysis in an environmental context
☆67Updated 4 years ago
Alternatives and similar repositories for microbiomeSeq
Users that are interested in microbiomeSeq are comparing it to the libraries listed below
Sorting:
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- diversity estimation under ecological networks☆83Updated 2 months ago
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 3 months ago
- functions for analyzing phyloseq data☆28Updated 4 months ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Statistical analysis for sparse high-throughput sequencing☆69Updated 6 months ago
- Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files☆31Updated 8 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last week
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆123Updated last month
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆67Updated last year
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- Miscellaneous functions for metagenomic analysis.☆50Updated 3 weeks ago
- Tools for visualising microbial community amplicon data☆67Updated 2 months ago
- Count Regression for Correlated Observations with the Beta-binomial☆106Updated 3 months ago
- Speedy versions of phyloseq functions☆47Updated last year
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆26Updated 2 years ago
- ☆75Updated last year
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆33Updated 5 years ago
- R implementation of the LEfSe method☆59Updated 2 months ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆76Updated 3 months ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆37Updated 9 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆63Updated 3 years ago
- Microbiome analysis☆51Updated last week
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year