MaAsLin3: Microbiome Multivariate Association with Linear Models
☆83May 13, 2026Updated last week
Alternatives and similar repositories for maaslin3
Users that are interested in maaslin3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆155Feb 5, 2026Updated 3 months ago
- R markdown documents copied from other folders on Dec 15th 2021☆14Nov 4, 2025Updated 6 months ago
- MAGScoT - a MAG scoring and refinement tool☆44Apr 8, 2026Updated last month
- ☆13Jul 21, 2025Updated 10 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆52May 8, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Metabolic scanning and annotation of Metagenomes☆10Dec 18, 2025Updated 5 months ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆14Jan 8, 2024Updated 2 years ago
- ☆32Jun 12, 2023Updated 2 years ago
- Make Picrust2 Output Analysis and Visualization Easier☆195May 10, 2026Updated 2 weeks ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆136Apr 27, 2026Updated 3 weeks ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆167Feb 13, 2026Updated 3 months ago
- Discovery of conserved gene clusters in multiple genomes☆132Jan 16, 2026Updated 4 months ago
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated last year
- Python package to study microbial communities using metabolic modeling.☆128Mar 31, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆27Jul 22, 2024Updated last year
- ☆15Oct 14, 2023Updated 2 years ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆91May 11, 2026Updated 2 weeks ago
- Read alignment statistics for metagenomics☆397Apr 8, 2026Updated last month
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆16Mar 31, 2022Updated 4 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆304Feb 3, 2026Updated 3 months ago
- gutSMASH☆59Oct 3, 2025Updated 7 months ago
- Materials for the STAMPS 2024 course at the MBL in Woods Hole, MA, USA☆13Jul 25, 2024Updated last year
- http://huttenhower.sph.harvard.edu/waafle☆24Feb 26, 2026Updated 3 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- MAGinator - Accurate SNV calling and profiling of MAGs☆27Mar 23, 2026Updated 2 months ago
- Locate antiviral defence systems in prokaryotic genomes☆74Oct 22, 2024Updated last year
- Genomic sequence aligner☆33May 17, 2026Updated last week
- strain-level analysis tools☆41Oct 21, 2024Updated last year
- ☆32Jan 4, 2025Updated last year
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆23May 16, 2026Updated last week
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆128May 18, 2026Updated last week
- Public repository for cFMD - curatedFoodMetagenomicData☆35Apr 21, 2026Updated last month
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆187Mar 17, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆226Mar 24, 2026Updated 2 months ago
- Processing support for Greengenes2☆15Jul 31, 2023Updated 2 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆128Updated this week
- Assessing the quality of metagenome-derived genome bins using machine learning☆263Mar 20, 2025Updated last year
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆52May 8, 2026Updated 2 weeks ago
- ☆60May 11, 2026Updated 2 weeks ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆75Mar 3, 2026Updated 2 months ago