MaAsLin3: Microbiome Multivariate Association with Linear Models
☆86Sep 15, 2026Updated last week
Alternatives and similar repositories for maaslin3
Users that are interested in maaslin3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆154Feb 5, 2026Updated 7 months ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆79Sep 7, 2026Updated 2 weeks ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆144Sep 18, 2026Updated last week
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆323Sep 15, 2026Updated last week
- motus - a tool for marker gene-based OTU (mOTU) profiling☆187Jul 17, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆84Aug 23, 2026Updated last month
- Make Picrust2 Output Analysis and Visualization Easier☆207Aug 11, 2026Updated last month
- Read alignment statistics for metagenomics☆407Updated this week
- Assessing the quality of metagenome-derived genome bins using machine learning☆280Mar 20, 2025Updated last year
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆274May 13, 2026Updated 4 months ago
- CroCoDeEL detects cross-sample contamination in shotgun metagenomic data☆32Sep 8, 2026Updated 2 weeks ago
- Public repository for cFMD - curatedFoodMetagenomicData☆39Jun 18, 2026Updated 3 months ago
- MAGScoT - a MAG scoring and refinement tool☆49Apr 8, 2026Updated 5 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆171Jun 10, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 6 months ago
- R markdown documents copied from other folders on Dec 15th 2021☆14Nov 4, 2025Updated 10 months ago
- Import qiime2 artifacts to R☆185Dec 12, 2024Updated last year
- Discovery of conserved gene clusters in multiple genomes☆135Aug 21, 2026Updated last month
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆477Sep 20, 2026Updated last week
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆342Updated this week
- ⚡🦠🧬📇 Rapid microbial genomes-to-report pipeline☆76Updated this week
- A new high-resolution long-read metagenome assembler for even noisy reads☆173Sep 9, 2026Updated 2 weeks ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆17Mar 31, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆424Sep 10, 2026Updated 2 weeks ago
- ☆15Oct 14, 2023Updated 2 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆234Mar 24, 2026Updated 6 months ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆253Updated this week
- REference Sequence annotation and CuRatIon Pipeline☆102Updated this week
- Repository for general metagenomics Nextflow pipeline☆27Aug 31, 2026Updated 3 weeks ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆57May 8, 2026Updated 4 months ago
- geNomad: Identification of mobile genetic elements☆334Mar 29, 2026Updated 5 months ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆95May 11, 2026Updated 4 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆27Jun 20, 2023Updated 3 years ago
- An R package for downstream data analysis of microbiome omics data☆293Updated this week
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆187Sep 9, 2026Updated 2 weeks ago
- mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models☆15Aug 20, 2025Updated last year
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆384Aug 1, 2025Updated last year
- MicrobeRX☆17Aug 11, 2025Updated last year
- Python package to study microbial communities using metabolic modeling.☆138Updated this week