biobakery / maaslin3
MaAsLin3: Microbiome Multivariate Association with Linear Models
☆24Updated 2 weeks ago
Alternatives and similar repositories for maaslin3:
Users that are interested in maaslin3 are comparing it to the libraries listed below
- ☆18Updated 4 months ago
- ☆48Updated 9 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆52Updated last month
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- ☆15Updated 2 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆47Updated 6 months ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆23Updated 3 months ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated this week
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated last week
- A toolkit for prokaryotic comparative genomics☆40Updated last week
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆32Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆37Updated 3 months ago
- ☆41Updated 3 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆26Updated 2 months ago
- IslandPath standalone software☆31Updated last year
- Improvement of metagenome-assembled genomes☆51Updated 4 years ago
- Discover and annotate the virome☆35Updated 3 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- ☆11Updated last year
- ☆50Updated 11 months ago
- An algorithm for clustering metagenomic sequences.☆33Updated last month
- KEGG Module Evaluation Tool☆28Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 10 months ago
- ☆62Updated last month
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆20Updated last year
- ☆27Updated 3 weeks ago