A Python package for microbiome sequencing analysis with QIIME 2
☆47Jan 28, 2024Updated 2 years ago
Alternatives and similar repositories for dokdo
Users that are interested in dokdo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast, accurate taxonomic assignments for the human vaginal microbiota☆11Mar 19, 2026Updated 3 weeks ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆100Apr 3, 2026Updated last week
- ☆18Nov 19, 2022Updated 3 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Feb 3, 2020Updated 6 years ago
- ☆89May 22, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scanning and visualization for variable gap motifs.☆18Aug 6, 2024Updated last year
- ☆20Mar 31, 2021Updated 5 years ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Nov 14, 2025Updated 5 months ago
- A fast and scalable phylogenetic tree viewer for microbiome data analysis☆55Aug 4, 2024Updated last year
- Download assembly files from NCBI☆13May 9, 2023Updated 2 years ago
- Import qiime2 artifacts to R☆178Dec 12, 2024Updated last year
- A Python package for pharmacogenomics (PGx) research☆86Mar 22, 2026Updated 3 weeks ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆61Jul 28, 2024Updated last year
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Woltka: a versatile meta'omic data classifier☆77Sep 8, 2025Updated 7 months ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆242Updated this week
- A repository for the lessons and notebooks used for Binder tutorials☆19Aug 4, 2020Updated 5 years ago
- PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes☆26Dec 4, 2023Updated 2 years ago
- raw data from tax-credit project☆14Sep 19, 2019Updated 6 years ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆18Jul 16, 2024Updated last year
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆132Mar 14, 2026Updated last month
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 5 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆115Nov 20, 2023Updated 2 years ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆24Jun 9, 2021Updated 4 years ago
- Python Toolkit for using containerized programs in either Singularity or Docker☆29Mar 19, 2024Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- SemiBin: metagenomics binning with self-supervised deep learning☆158Feb 19, 2026Updated last month
- A visualization tool for exploratory data analysis of metagenomic data☆39Mar 22, 2022Updated 4 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Aug 23, 2023Updated 2 years ago
- A complete pipeline for metagenomic analysis☆439Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆89Oct 27, 2023Updated 2 years ago
- ☆44Jan 23, 2026Updated 2 months ago
- More scalable dereplication for metagenome assembled genomes☆79Mar 8, 2026Updated last month
- tree visualization for tree + annotation data☆60Jun 17, 2025Updated 9 months ago
- Functions to manipulate and visualize microbial community data☆12Sep 15, 2023Updated 2 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆229Apr 1, 2026Updated last week
- ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data☆11Sep 6, 2022Updated 3 years ago