sbslee / dokdoLinks
A Python package for microbiome sequencing analysis with QIIME 2
☆47Updated 2 years ago
Alternatives and similar repositories for dokdo
Users that are interested in dokdo are comparing it to the libraries listed below
Sorting:
- Pipeline for metabolic annotation of microbial genomes☆150Updated 10 months ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆129Updated 3 months ago
- CLI tool to annotate genes with KOfam☆88Updated 2 years ago
- Supporting code for uncultivated gut virus manuscript☆78Updated 2 years ago
- Similarity networks of biosynthetic gene clusters☆152Updated last week
- Bioinformatics program inStrain☆181Updated 9 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆67Updated 2 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆81Updated 2 years ago
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 8 months ago
- (Meta-)genome screening for functional and natural product gene sequences☆101Updated last week
- Bioinformatics tool for Locus Visualisation☆159Updated 2 weeks ago
- MGnify genome analysis pipeline☆108Updated last month
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆146Updated last month
- Bioinformatics Tools☆90Updated this week
- motus - a tool for marker gene-based OTU (mOTU) profiling☆168Updated 2 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆159Updated 7 months ago
- Download files from NCBI Entrez by accession☆134Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- Antibiotic resistance prediction in minutes☆114Updated last year
- CAMISIM: Simulating metagenomes and microbial communities☆221Updated this week
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆158Updated 9 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆234Updated 3 months ago
- a tool for inferring species tree from sequencing reads☆156Updated 2 months ago
- Materials and tutorials for the 2020 ISB Microbiome Course☆31Updated 3 years ago
- Find clustered hits from a BLAST search☆132Updated 3 weeks ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆61Updated last year
- DDBJ Fast Annotation and Submission Tool☆84Updated last week
- ☆133Updated last year
- A user-friendly workflow for phylogenomics☆225Updated last week
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆61Updated last year