sbslee / dokdoLinks
A Python package for microbiome sequencing analysis with QIIME 2
☆45Updated last year
Alternatives and similar repositories for dokdo
Users that are interested in dokdo are comparing it to the libraries listed below
Sorting:
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆117Updated 3 months ago
- CLI tool to annotate genes with KOfam☆86Updated 2 years ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 6 months ago
- Bioinformatics program inStrain☆175Updated 4 months ago
- (Meta-)genome screening for functional and natural product gene sequences☆91Updated last week
- Bioinformatics tool for Locus Visualisation☆122Updated 4 months ago
- Supporting code for uncultivated gut virus manuscript☆74Updated 2 years ago
- Materials and tutorials for the 2020 ISB Microbiome Course☆31Updated 2 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- Simple bacterial assembly and annotation pipeline☆77Updated 2 weeks ago
- Similarity networks of biosynthetic gene clusters☆129Updated 3 weeks ago
- Bioinformatics Tools☆89Updated 3 weeks ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆123Updated last year
- ☆84Updated last year
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆154Updated 3 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆156Updated last year
- Find clustered hits from a BLAST search☆119Updated 9 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆59Updated last year
- Antibiotic resistance prediction in minutes☆112Updated 10 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆154Updated 5 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆140Updated 2 weeks ago
- High-quality circular representations of taxonomic and phylogenetic trees☆104Updated last year
- MGnify genome analysis pipeline☆107Updated last month
- An R package designed for drawing gene arrow maps☆88Updated 2 months ago
- gutSMASH☆55Updated 9 months ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆96Updated 2 years ago
- Metagenomic classification of long-read sequencing data☆94Updated 2 weeks ago
- ☆34Updated 4 years ago
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆36Updated 6 years ago