A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio
☆15Oct 16, 2026Updated this week
Alternatives and similar repositories for NextITS
Users that are interested in NextITS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Aug 15, 2024Updated 2 years ago
- ☆11Jan 20, 2022Updated 4 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆11Mar 2, 2023Updated 3 years ago
- Look Up Guild Information for Fungi in R☆26Aug 14, 2026Updated 2 months ago
- ITS region extraction for long-read amplicon sequencing☆24Aug 26, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- 🍄 Qiime2 ITS classifiers for the UNITE database☆55Sep 11, 2026Updated last month
- Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes☆10Nov 14, 2022Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Jun 14, 2025Updated last year
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- A robust and fast clustering method for amplicon-based studies☆30Mar 23, 2023Updated 3 years ago
- General procedure for making QIIME 2 compatible SILVA reference files☆20Oct 3, 2024Updated 2 years ago
- Phinch is a data visualization framework aimed at promoting novel explorations of large biological datasets (microbiomes, metagenomes, et…☆43May 7, 2024Updated 2 years ago
- Repo for course Tools for complex data analysis☆11Jul 15, 2024Updated 2 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆102Sep 10, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆20Jul 26, 2024Updated 2 years ago
- Pipeline for the Nanopore 16S and ITS long read clustering and taxonomy classification☆23Updated this week
- Long read metagenomics practical at EBAME18☆18Oct 3, 2018Updated 8 years ago
- Orchestrating Microbiome Analysis☆112Updated this week
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆51Jun 6, 2026Updated 4 months ago
- FUNGuild: parsing OTUs into functional guilds☆135Apr 26, 2024Updated 2 years ago
- 🎆 ✨ Wrapper around fireworks-js to bring fireworks to your Shiny application☆10Mar 8, 2026Updated 7 months ago
- An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing☆11Sep 11, 2026Updated last month
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆37Oct 26, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Aug 2, 2022Updated 4 years ago
- An interactive web application for demonstrating and using phyloseq.☆60Jul 18, 2019Updated 7 years ago
- Beautify the phylogenetic tree using one Excel sheet only☆18Mar 2, 2024Updated 2 years ago
- StaphScope is a comprehensive bioinformatics tool for Staphylococcus aureus genomic analysis including MLST typing, spa typing, SCCme…☆36Sep 22, 2026Updated 3 weeks ago
- (Meta-)genome screening for functional and natural product gene sequences☆119Oct 8, 2026Updated last week
- PoSeiDon: positive selection detection and recombination analysis pipeline☆40Sep 22, 2025Updated last year
- dada2 formatted nifH database☆13May 17, 2024Updated 2 years ago
- Import qiime2 artifacts to R☆185Dec 12, 2024Updated last year
- 16S RNA microbiome pipeline☆14Jun 2, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆20Apr 9, 2021Updated 5 years ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated 2 years ago
- Automated Learning Pipeline for Antimicrobial Resistance☆13Oct 3, 2026Updated 2 weeks ago
- A tool for typing SCCmec cassettes in assemblies☆13Aug 25, 2024Updated 2 years ago
- EcoliTyper: A species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli. Perfect for cli…☆29Aug 9, 2026Updated 2 months ago
- genomic variant frequency estimation☆12Sep 4, 2026Updated last month
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆129Jan 8, 2026Updated 9 months ago