A companion R package for the MicrobiomeAnalyst web server
☆131Feb 22, 2026Updated last week
Alternatives and similar repositories for MicrobiomeAnalystR
Users that are interested in MicrobiomeAnalystR are comparing it to the libraries listed below
Sorting:
- ☆23May 16, 2020Updated 5 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- USDA Nutrition codes Tree☆11Feb 13, 2020Updated 6 years ago
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆641Updated this week
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆73Sep 1, 2022Updated 3 years ago
- microbiome R package☆311Aug 19, 2025Updated 6 months ago
- bioBakery tools for meta'omic profiling☆305Jun 3, 2025Updated 8 months ago
- ☆14Feb 4, 2026Updated 3 weeks ago
- Code, unit tests, and tutorials for running PICRUSt2☆381Nov 27, 2025Updated 3 months ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Nov 23, 2022Updated 3 years ago
- ☆42Nov 20, 2017Updated 8 years ago
- Visualize microbiome data with black magic ggtree☆68Sep 3, 2020Updated 5 years ago
- SourceTracker2☆86Jul 10, 2024Updated last year
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 5 years ago
- R package for microbiome biomarker discovery☆193Feb 19, 2025Updated last year
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆129Oct 20, 2025Updated 4 months ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆125May 12, 2024Updated last year
- gutSMASH☆57Oct 3, 2025Updated 4 months ago
- Neural networks for microbe-metabolite interaction analysis☆129Nov 4, 2022Updated 3 years ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆236Feb 23, 2026Updated last week
- R package for MetaboAnalyst☆377Feb 18, 2026Updated last week
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 3 years ago
- A comprehensive R package for deep mining microbiome☆191Nov 3, 2025Updated 3 months ago
- Statistics and visualization for amplicon data☆73Apr 25, 2023Updated 2 years ago
- An R package for data analysis in microbial community ecology☆269Updated this week
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 7 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Jan 27, 2026Updated last month
- ☆12Jun 12, 2019Updated 6 years ago
- Analysing Metagenomic Species (MGS)☆42Nov 12, 2020Updated 5 years ago
- Using R language in microbiome analysis☆348May 10, 2023Updated 2 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- Import qiime2 artifacts to R☆176Dec 12, 2024Updated last year
- ☆18Nov 19, 2022Updated 3 years ago
- Integrated Network Analysis Pipeline☆18Dec 19, 2024Updated last year
- Easy Amplicon data analysis pipeline☆347Jan 30, 2026Updated last month
- Metagenome analysis pipeline☆100Jul 26, 2021Updated 4 years ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆235Jan 20, 2026Updated last month
- ☆149Dec 30, 2025Updated 2 months ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆457Feb 13, 2026Updated 2 weeks ago