A companion R package for the MicrobiomeAnalyst web server
☆131Apr 5, 2026Updated this week
Alternatives and similar repositories for MicrobiomeAnalystR
Users that are interested in MicrobiomeAnalystR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- ☆23May 16, 2020Updated 5 years ago
- microbiome R package☆314Aug 19, 2025Updated 7 months ago
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆644Feb 27, 2026Updated last month
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆74Sep 1, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R package for microbiome biomarker discovery☆197Feb 19, 2025Updated last year
- USDA Nutrition codes Tree☆11Feb 13, 2020Updated 6 years ago
- bioBakery tools for meta'omic profiling☆311Jun 3, 2025Updated 10 months ago
- Code, unit tests, and tutorials for running PICRUSt2☆385Nov 27, 2025Updated 4 months ago
- SourceTracker2☆86Jul 10, 2024Updated last year
- Visualize microbiome data with black magic ggtree☆68Sep 3, 2020Updated 5 years ago
- ☆43Nov 20, 2017Updated 8 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Nov 23, 2022Updated 3 years ago
- A comprehensive R package for deep mining microbiome☆191Apr 2, 2026Updated last week
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆130Apr 1, 2026Updated last week
- ☆14Feb 4, 2026Updated 2 months ago
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 7 years ago
- gutSMASH☆58Oct 3, 2025Updated 6 months ago
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 5 years ago
- Using R language in microbiome analysis☆351May 10, 2023Updated 2 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Mar 31, 2026Updated last week
- Metagenome analysis pipeline☆101Jul 26, 2021Updated 4 years ago
- R package for MetaboAnalyst☆386Apr 3, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Neural networks for microbe-metabolite interaction analysis☆129Nov 4, 2022Updated 3 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆125May 12, 2024Updated last year
- An R package for downstream data analysis of microbiome omics data☆274Updated this week
- Easy Amplicon data analysis pipeline☆355Jan 30, 2026Updated 2 months ago
- Statistics and visualization for amplicon data☆74Apr 25, 2023Updated 2 years ago
- tidyMicro GitHup Repository☆21Nov 17, 2021Updated 4 years ago
- Import qiime2 artifacts to R☆177Dec 12, 2024Updated last year
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆153Feb 5, 2026Updated 2 months ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆458Feb 13, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Microbial ecological network visualization clustering☆145Nov 20, 2025Updated 4 months ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 3 years ago
- ☆12Jun 12, 2019Updated 6 years ago
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆240Jan 20, 2026Updated 2 months ago
- metaX: a flexible and comprehensive software for processing omics data.☆26Jun 16, 2023Updated 2 years ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆239Mar 31, 2026Updated last week