xia-lab / MicrobiomeAnalystRLinks
A companion R package for the MicrobiomeAnalyst web server
☆126Updated 2 months ago
Alternatives and similar repositories for MicrobiomeAnalystR
Users that are interested in MicrobiomeAnalystR are comparing it to the libraries listed below
Sorting:
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆145Updated 10 months ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆117Updated 3 months ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆120Updated last year
- A comprehensive R package for deep mining microbiome☆190Updated 2 months ago
- Curated Metagenomic Data of the Human Microbiome☆140Updated 2 months ago
- ☆84Updated last year
- Make Picrust2 Output Analysis and Visualization Easier☆156Updated this week
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆115Updated 2 years ago
- Import qiime2 artifacts to R☆173Updated 9 months ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆92Updated 3 weeks ago
- Statistical Analysis of Metagenomic Profiles☆93Updated 5 years ago
- Microbial ecological network visualization clustering☆126Updated 6 months ago
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆58Updated 3 months ago
- Scripts for stat and plot figures in rice microbiome paper☆19Updated 6 years ago
- Metagenome analysis pipeline☆99Updated 4 years ago
- ☆56Updated last year
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆63Updated 3 years ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆161Updated 2 weeks ago
- Statistics and visualization for amplicon data☆71Updated 2 years ago
- This is an unofficial repo for Tax4Fun2☆26Updated 3 years ago
- Neural networks for microbe-metabolite interaction analysis☆124Updated 2 years ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆211Updated last week
- R package for microbiome biomarker discovery☆189Updated 6 months ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆128Updated last month
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- Course material for the metagenomics course☆44Updated 3 years ago
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆41Updated 5 years ago
- Orchestrating Microbiome Analysis☆100Updated last week
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆115Updated last year
- Fast expectation maximization for microbial source tracking☆129Updated last year