jbisanz / MicrobeR
Handy tools for Microbiome analysis in R
β18Updated 5 years ago
Alternatives and similar repositories for MicrobeR:
Users that are interested in MicrobeR are comparing it to the libraries listed below
- A comprehensive and customizable R package for microbiome analysis.β23Updated 2 years ago
- Schloss Lab Tools for Reproducible Microbiome Research π©β31Updated last year
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.β23Updated last year
- A shiny package for microbiome functional enrichment analysisβ37Updated last week
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq dataβ16Updated 11 months ago
- Maximum Likelihood Amplicon Pipelineβ22Updated 11 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profilesβ35Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studiβ¦β33Updated 4 years ago
- A set of R functions that help faciliate a lot of tedious processingβ18Updated 6 years ago
- Do microbiome analysis with dada2 and phyloseq objectβ13Updated 6 months ago
- A fast method for analysis of composition of microbiomesβ8Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductorβ28Updated 2 months ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.β27Updated 2 years ago
- Microbiota Analysis in R Easilyβ11Updated 2 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and hostβ¦β21Updated last year
- Microbiome researchβ20Updated 2 years ago
- tidyMicro GitHup Repositoryβ17Updated 3 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.β34Updated 2 years ago
- β26Updated last year
- Ying's tools for analysis, with particular focus on microbiome dataβ41Updated last month
- β12Updated 7 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measuresβ15Updated 2 years ago
- β13Updated 5 months ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.β¦β34Updated 3 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscriptβ33Updated 4 years ago
- β13Updated 4 months ago
- β41Updated 7 years ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Studyβ10Updated 6 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studiesβ30Updated last year
- β23Updated 6 years ago