jbisanz / MicrobeRLinks
Handy tools for Microbiome analysis in R
☆18Updated 6 years ago
Alternatives and similar repositories for MicrobeR
Users that are interested in MicrobeR are comparing it to the libraries listed below
Sorting:
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 months ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- Microbiota Analysis in R Easily☆11Updated 3 years ago
- HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq☆11Updated 9 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- Microbiome research☆21Updated 3 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last week
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 3 weeks ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 3 months ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Metagenomic AnalySis with QUantitative pipEline☆12Updated 6 years ago
- tidyMicro GitHup Repository☆19Updated 3 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆38Updated 9 years ago
- R shiny app for interactive microbiome analysis☆55Updated 2 months ago
- Tools for visualising microbial community amplicon data☆67Updated 3 months ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Updated 8 years ago
- A fast method for analysis of composition of microbiomes☆8Updated 3 years ago
- ☆41Updated 7 years ago
- Talk to the NCBI EUtils☆22Updated 4 years ago
- ☆13Updated 5 years ago
- R package computes correlation for relative abundances☆13Updated 8 years ago
- ggtree version of plotTree.R☆18Updated 6 years ago