katrikorpela / mareLinks
Microbiota Analysis in R Easily
☆12Updated 3 years ago
Alternatives and similar repositories for mare
Users that are interested in mare are comparing it to the libraries listed below
Sorting:
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 4 months ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- tidyMicro GitHup Repository☆21Updated 4 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 6 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated last year
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last month
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆33Updated 3 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- ☆43Updated 8 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 10 years ago
- Linear Decomposition Model☆25Updated 2 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆10Updated 5 years ago
- R shiny app for interactive microbiome analysis☆56Updated 6 months ago
- An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)☆20Updated 3 weeks ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated last year
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Do microbiome analysis with dada2 and phyloseq object☆14Updated last year
- Microbiome analysis☆53Updated this week
- fastqcr: Quality Control of Sequencing Data☆75Updated 2 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 3 years ago
- A shiny package for microbiome functional enrichment analysis☆38Updated last week
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 7 years ago
- Tools for visualising microbial community amplicon data☆70Updated last month
- Microbiome research☆21Updated 3 years ago
- Talk to the NCBI EUtils☆22Updated 5 years ago
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆57Updated last year