Alternatives and similar repositories for mare

Users that are interested in mare are comparing it to the libraries listed below

• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆23Updated 4 months ago
• jbisanz / MicrobeR
  Handy tools for Microbiome analysis in R
  ☆18Updated 6 years ago
• CharlieCarpenter / tidyMicro
  tidyMicro GitHup Repository
  ☆21Updated 4 years ago
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆31Updated 2 years ago
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆75Updated 2 years ago
• microsud / microbiomeutilities
  The is mostly a wrapper tool using phyloseq and microbiome R packages.
  ☆33Updated 3 years ago
• brendankelly / micropower
  power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA
  ☆39Updated 10 years ago
• nhanhocu / metamicrobiomeR
  An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…
  ☆34Updated 5 years ago
• gschofl / reutils
  Talk to the NCBI EUtils
  ☆22Updated 5 years ago
• KasperSkytte / ampvis2
  Tools for visualising microbial community amplicon data
  ☆70Updated last month
• aametwally / MetaLonDA
  METAgenomic LONgitudinal Differential Abundance method
  ☆16Updated 5 years ago
• twbattaglia / koeken
  A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.
  ☆26Updated 8 years ago
• ying14 / yingtools2
  Ying's tools for analysis, with particular focus on microbiome data
  ☆41Updated 3 weeks ago
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆24Updated last year
• microbiome / mia
  Microbiome analysis
  ☆53Updated last month
• statdivlab / corncob
  Count Regression for Correlated Observations with the Beta-binomial
  ☆106Updated last month
• spholmes / F1000_workflow
  ☆43Updated 8 years ago
• GMOD / JBrowseR
  R interface to the JBrowse 2 Linear Genome View.
  ☆39Updated last year
• wejlab / animalcules
  R shiny app for interactive microbiome analysis
  ☆56Updated 6 months ago
• itsmisterbrown / microfiltR
  accessory functions for processing microbial community data
  ☆12Updated 2 years ago
• joey711 / shiny-phyloseq
  An interactive web application for demonstrating and using phyloseq.
  ☆60Updated 6 years ago
• barreiro-r / fastqc-viz
  A modest re-desing update for the classic FastQC report.
  ☆29Updated 3 months ago
• YuLab-SMU / tidytree
  A Tidy Tool for Phylogenetic Tree Data Manipulation
  ☆57Updated last year
• mcalgaro93 / sc2meta
  Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…
  ☆10Updated 5 years ago
• drostlab / metablastr
  Seamless Integration of BLAST Sequence Searches in R
  ☆30Updated 2 years ago
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated last year
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated 4 months ago
• ggloor / ALDEx_bioc
  ALDEx_bioc is the working directory for updating bioconductor
  ☆29Updated 7 months ago
• vmikk / metagMisc
  Miscellaneous functions for metagenomic analysis.
  ☆51Updated last month
• twbattaglia / btools
  A set of R functions that help faciliate a lot of tedious processing
  ☆18Updated 7 years ago