katrikorpela / mare
Microbiota Analysis in R Easily
β11Updated 2 years ago
Alternatives and similar repositories for mare:
Users that are interested in mare are comparing it to the libraries listed below
- Handy tools for Microbiome analysis in Rβ18Updated 5 years ago
- A comprehensive and customizable R package for microbiome analysis.β21Updated 2 years ago
- Schloss Lab Tools for Reproducible Microbiome Research π©β30Updated last year
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.β23Updated last year
- tidyMicro GitHup Repositoryβ17Updated 3 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studiβ¦β33Updated 4 years ago
- Maximum Likelihood Amplicon Pipelineβ22Updated 8 months ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)β18Updated 3 years ago
- Ying's tools for analysis, with particular focus on microbiome dataβ41Updated last month
- A shiny package for microbiome functional enrichment analysisβ37Updated 3 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profilesβ35Updated 10 months ago
- A set of R functions that help faciliate a lot of tedious processingβ18Updated 6 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVAβ35Updated 9 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.β26Updated 8 years ago
- Do microbiome analysis with dada2 and phyloseq objectβ13Updated 4 months ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measuresβ14Updated 2 years ago
- Non parametric differential abundance tests for microbiome dataβ9Updated 3 years ago
- Talk to the NCBI EUtilsβ21Updated 4 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.β34Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductorβ28Updated 3 weeks ago
- accessory functions for processing microbial community dataβ12Updated 2 years ago
- Workshop for NGS'18 conference, Barcelona 2018β24Updated 6 years ago
- Omics Data Analysis Toolsβ11Updated 2 months ago
- β21Updated 4 years ago
- SHAMAN is a SHiny application for Metagenomic ANalysis including a bioinformatic workflow, the statistical analysis and multiple visualizβ¦β13Updated 2 weeks ago
- β26Updated 11 months ago
- Speedy versions of phyloseq functionsβ46Updated 10 months ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq dataβ17Updated 9 months ago
- METAgenomic LONgitudinal Differential Abundance methodβ16Updated 5 years ago
- HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeqβ11Updated 9 years ago